Results 41 - 44 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25558 | 5' | -59.5 | NC_005337.1 | + | 131888 | 0.69 | 0.549309 |
Target: 5'- -cCGCCUGCgcgUGUCGUcgACGcACCCGAu -3' miRNA: 3'- gaGCGGACG---GCAGCGa-UGC-UGGGCUu -5' |
|||||||
25558 | 5' | -59.5 | NC_005337.1 | + | 132045 | 0.68 | 0.618419 |
Target: 5'- cCUCGCgcgguucCUGCgCG-CGCUcGCGGCCCGGg -3' miRNA: 3'- -GAGCG-------GACG-GCaGCGA-UGCUGGGCUu -5' |
|||||||
25558 | 5' | -59.5 | NC_005337.1 | + | 132265 | 0.67 | 0.669923 |
Target: 5'- -aCGCCgaugGCCGUgcUGCUGCGGucgUCCGAc -3' miRNA: 3'- gaGCGGa---CGGCA--GCGAUGCU---GGGCUu -5' |
|||||||
25558 | 5' | -59.5 | NC_005337.1 | + | 133032 | 0.7 | 0.491246 |
Target: 5'- aUCGCCcgGCuCGUCGUgUACGgGCCCGAu -3' miRNA: 3'- gAGCGGa-CG-GCAGCG-AUGC-UGGGCUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home