Results 41 - 44 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25558 | 5' | -59.5 | NC_005337.1 | + | 10824 | 0.69 | 0.549309 |
Target: 5'- -aUGCCgUGCUGgCGCUGCGGCgCGGAg -3' miRNA: 3'- gaGCGG-ACGGCaGCGAUGCUGgGCUU- -5' |
|||||||
25558 | 5' | -59.5 | NC_005337.1 | + | 10011 | 0.67 | 0.689967 |
Target: 5'- -gCGCC-GCCGUCGUcgugcuCGAuCCCGGAa -3' miRNA: 3'- gaGCGGaCGGCAGCGau----GCU-GGGCUU- -5' |
|||||||
25558 | 5' | -59.5 | NC_005337.1 | + | 2164 | 0.71 | 0.436187 |
Target: 5'- --aGCCUGCCG-CGC-ACGGCgCCGAc -3' miRNA: 3'- gagCGGACGGCaGCGaUGCUG-GGCUu -5' |
|||||||
25558 | 5' | -59.5 | NC_005337.1 | + | 1671 | 0.67 | 0.659852 |
Target: 5'- -cCGCC-GCCGcgUCGUUGCGguGCCCGGu -3' miRNA: 3'- gaGCGGaCGGC--AGCGAUGC--UGGGCUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home