miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25558 5' -59.5 NC_005337.1 + 72372 0.67 0.639652
Target:  5'- aUCGCgCggacgGCCGUCGCggucaGCGAgccCCCGGGg -3'
miRNA:   3'- gAGCG-Ga----CGGCAGCGa----UGCU---GGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 101648 0.67 0.639652
Target:  5'- aUC-CCguacGCCGUCGCccuuUGCGACaCCGAAg -3'
miRNA:   3'- gAGcGGa---CGGCAGCG----AUGCUG-GGCUU- -5'
25558 5' -59.5 NC_005337.1 + 86331 0.68 0.62954
Target:  5'- gUCGCCagcgucagGCCGgccuccucCGCaACGACCCGGGg -3'
miRNA:   3'- gAGCGGa-------CGGCa-------GCGaUGCUGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 93773 0.68 0.619429
Target:  5'- cCUCGUCUucgaucGCCGgacgCGCUACGACgUGGu -3'
miRNA:   3'- -GAGCGGA------CGGCa---GCGAUGCUGgGCUu -5'
25558 5' -59.5 NC_005337.1 + 132045 0.68 0.618419
Target:  5'- cCUCGCgcgguucCUGCgCG-CGCUcGCGGCCCGGg -3'
miRNA:   3'- -GAGCG-------GACG-GCaGCGA-UGCUGGGCUu -5'
25558 5' -59.5 NC_005337.1 + 36281 0.68 0.609328
Target:  5'- -cCGCaCUGCgCGUC-CUGCGuucGCCCGAAg -3'
miRNA:   3'- gaGCG-GACG-GCAGcGAUGC---UGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 115501 0.68 0.609328
Target:  5'- -gCGCCgGCC-UCGCgaggucgACGACCUGGAg -3'
miRNA:   3'- gaGCGGaCGGcAGCGa------UGCUGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 27824 0.68 0.589183
Target:  5'- -cCGgCUGUCGUUGCUGCGGuuCUCGAAc -3'
miRNA:   3'- gaGCgGACGGCAGCGAUGCU--GGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 117753 0.68 0.579153
Target:  5'- -aCGCCUGCUcUCGUUGgucuUGGCCCGGGu -3'
miRNA:   3'- gaGCGGACGGcAGCGAU----GCUGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 16046 0.69 0.56916
Target:  5'- -gCGCCUGCCGcCGC-GCGGgCCGc- -3'
miRNA:   3'- gaGCGGACGGCaGCGaUGCUgGGCuu -5'
25558 5' -59.5 NC_005337.1 + 38695 0.69 0.55921
Target:  5'- -cCGCCUGgUGUCgGCgGCGGCCCGu- -3'
miRNA:   3'- gaGCGGACgGCAG-CGaUGCUGGGCuu -5'
25558 5' -59.5 NC_005337.1 + 10824 0.69 0.549309
Target:  5'- -aUGCCgUGCUGgCGCUGCGGCgCGGAg -3'
miRNA:   3'- gaGCGG-ACGGCaGCGAUGCUGgGCUU- -5'
25558 5' -59.5 NC_005337.1 + 131888 0.69 0.549309
Target:  5'- -cCGCCUGCgcgUGUCGUcgACGcACCCGAu -3'
miRNA:   3'- gaGCGGACG---GCAGCGa-UGC-UGGGCUu -5'
25558 5' -59.5 NC_005337.1 + 95326 0.69 0.547335
Target:  5'- gCUCGUCgucgguuagcgcGCCGUggCGCUGCGACaCCGGGg -3'
miRNA:   3'- -GAGCGGa-----------CGGCA--GCGAUGCUG-GGCUU- -5'
25558 5' -59.5 NC_005337.1 + 15869 0.69 0.539463
Target:  5'- gCUCGCCgGCC-UCGCUcAUGACCgGGu -3'
miRNA:   3'- -GAGCGGaCGGcAGCGA-UGCUGGgCUu -5'
25558 5' -59.5 NC_005337.1 + 95048 0.7 0.510311
Target:  5'- -aCGCCUGCgCGUUGUcGCGcacGCCCGGGu -3'
miRNA:   3'- gaGCGGACG-GCAGCGaUGC---UGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 133032 0.7 0.491246
Target:  5'- aUCGCCcgGCuCGUCGUgUACGgGCCCGAu -3'
miRNA:   3'- gAGCGGa-CG-GCAGCG-AUGC-UGGGCUu -5'
25558 5' -59.5 NC_005337.1 + 39175 0.7 0.489357
Target:  5'- aUCGCCgacugcggcaagGCCGUCGCcGCGggcuacgcggACCCGGAc -3'
miRNA:   3'- gAGCGGa-----------CGGCAGCGaUGC----------UGGGCUU- -5'
25558 5' -59.5 NC_005337.1 + 83145 0.7 0.481837
Target:  5'- uUCGCCUGCuCGUCGgUGCG-CUCGc- -3'
miRNA:   3'- gAGCGGACG-GCAGCgAUGCuGGGCuu -5'
25558 5' -59.5 NC_005337.1 + 2164 0.71 0.436187
Target:  5'- --aGCCUGCCG-CGC-ACGGCgCCGAc -3'
miRNA:   3'- gagCGGACGGCaGCGaUGCUG-GGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.