miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25559 3' -60.3 NC_005337.1 + 3643 0.69 0.535534
Target:  5'- uCCAGCgCCGCggccucguCGUCCGCgcagUCGGGGGUCu -3'
miRNA:   3'- -GGUCG-GGUG--------GUAGGUG----GGCCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 52265 0.69 0.545161
Target:  5'- aCCGGCCCAUgaucagcgaCAUCC-CCaucGAGGUCGc -3'
miRNA:   3'- -GGUCGGGUG---------GUAGGuGGgc-CUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 118435 0.69 0.554844
Target:  5'- -gGGCgaCACCAUCCGCCaGGAGGa-- -3'
miRNA:   3'- ggUCGg-GUGGUAGGUGGgCCUCCagc -5'
25559 3' -60.3 NC_005337.1 + 39251 0.69 0.564576
Target:  5'- uCCuGCCCGCCGUcCCGCCguucgCGGuGGcCGc -3'
miRNA:   3'- -GGuCGGGUGGUA-GGUGG-----GCCuCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 10276 0.69 0.564576
Target:  5'- cCCGGaCCACCAUCCuggCGGAGGggccUCGg -3'
miRNA:   3'- -GGUCgGGUGGUAGGuggGCCUCC----AGC- -5'
25559 3' -60.3 NC_005337.1 + 51530 0.69 0.568482
Target:  5'- -gAGCCCACCAucgcacacucgcugcUCCGCUCGGAGc--- -3'
miRNA:   3'- ggUCGGGUGGU---------------AGGUGGGCCUCcagc -5'
25559 3' -60.3 NC_005337.1 + 82224 0.68 0.574353
Target:  5'- gCGGCCCGCC-UCCGCCgugcaGGAGaaGUUGc -3'
miRNA:   3'- gGUCGGGUGGuAGGUGGg----CCUC--CAGC- -5'
25559 3' -60.3 NC_005337.1 + 36584 0.68 0.58122
Target:  5'- gCCGGUCCGCCAgcgcggcgugcagaUCCACCauGuGGUUGc -3'
miRNA:   3'- -GGUCGGGUGGU--------------AGGUGGgcCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 102535 0.68 0.594015
Target:  5'- -gAGUCCAUCuUCCugCgcgaGGAGGUCGu -3'
miRNA:   3'- ggUCGGGUGGuAGGugGg---CCUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 45184 0.68 0.613783
Target:  5'- aCCGGCUgGCCGU--GCCCGGGGcgcuGUCGc -3'
miRNA:   3'- -GGUCGGgUGGUAggUGGGCCUC----CAGC- -5'
25559 3' -60.3 NC_005337.1 + 88022 0.68 0.623689
Target:  5'- gCCGGCCCACCAUCC------AGGUCa -3'
miRNA:   3'- -GGUCGGGUGGUAGGugggccUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 81698 0.68 0.623689
Target:  5'- gCCAGCgCCgccgcGCCGUCC-CCgCGGAGccaGUCGu -3'
miRNA:   3'- -GGUCG-GG-----UGGUAGGuGG-GCCUC---CAGC- -5'
25559 3' -60.3 NC_005337.1 + 18487 0.67 0.633601
Target:  5'- uCCAGCaCCGgCGUCCAgCCGGGcgugaacauGUCGg -3'
miRNA:   3'- -GGUCG-GGUgGUAGGUgGGCCUc--------CAGC- -5'
25559 3' -60.3 NC_005337.1 + 103336 0.67 0.633601
Target:  5'- gCGGCUCACCcgCccgCugCUGGuGGUCGa -3'
miRNA:   3'- gGUCGGGUGGuaG---GugGGCCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 88752 0.67 0.633601
Target:  5'- aCCGGCUC-CCGacgCCgaggACCCGGAGG-CGc -3'
miRNA:   3'- -GGUCGGGuGGUa--GG----UGGGCCUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 97911 0.67 0.633601
Target:  5'- uCCAGCCagggGCCG-CCGCCCGuGGG-CGu -3'
miRNA:   3'- -GGUCGGg---UGGUaGGUGGGCcUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 127692 0.67 0.633601
Target:  5'- gUCGGCCgGCuCGUCCAUCCGGAccgCGc -3'
miRNA:   3'- -GGUCGGgUG-GUAGGUGGGCCUccaGC- -5'
25559 3' -60.3 NC_005337.1 + 71786 0.67 0.653416
Target:  5'- gCGG-CCGCC--CCGCCCG-AGGUCGg -3'
miRNA:   3'- gGUCgGGUGGuaGGUGGGCcUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 105451 0.67 0.653416
Target:  5'- gCUGG-CCGCCAUCUucuUCCGGGuGGUCGu -3'
miRNA:   3'- -GGUCgGGUGGUAGGu--GGGCCU-CCAGC- -5'
25559 3' -60.3 NC_005337.1 + 95483 0.67 0.653416
Target:  5'- gCAGCCaguCCAUgCACUCGGGcGcGUCGg -3'
miRNA:   3'- gGUCGGgu-GGUAgGUGGGCCU-C-CAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.