miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25559 3' -60.3 NC_005337.1 + 45184 0.68 0.613783
Target:  5'- aCCGGCUgGCCGU--GCCCGGGGcgcuGUCGc -3'
miRNA:   3'- -GGUCGGgUGGUAggUGGGCCUC----CAGC- -5'
25559 3' -60.3 NC_005337.1 + 46056 0.7 0.479197
Target:  5'- gCAGCCCGCC-UCCuCgaGGAGGcCGg -3'
miRNA:   3'- gGUCGGGUGGuAGGuGggCCUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 46381 0.72 0.400639
Target:  5'- gCCAGCgCgucaGCCAggUCCugCCGcGAGGUCa -3'
miRNA:   3'- -GGUCGgG----UGGU--AGGugGGC-CUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 49020 0.66 0.731404
Target:  5'- aCCAGaCCAUCAU-CAUCgCGGuGGUCGu -3'
miRNA:   3'- -GGUCgGGUGGUAgGUGG-GCCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 51530 0.69 0.568482
Target:  5'- -gAGCCCACCAucgcacacucgcugcUCCGCUCGGAGc--- -3'
miRNA:   3'- ggUCGGGUGGU---------------AGGUGGGCCUCcagc -5'
25559 3' -60.3 NC_005337.1 + 52265 0.69 0.545161
Target:  5'- aCCGGCCCAUgaucagcgaCAUCC-CCaucGAGGUCGc -3'
miRNA:   3'- -GGUCGGGUG---------GUAGGuGGgc-CUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 55684 0.66 0.701564
Target:  5'- -aAGCUCACCAUCCgcaucaacacggcGCCCauGGAGGcCc -3'
miRNA:   3'- ggUCGGGUGGUAGG-------------UGGG--CCUCCaGc -5'
25559 3' -60.3 NC_005337.1 + 58215 0.66 0.750261
Target:  5'- gCGGCgUACCG-CCGCgCGGcGGUCa -3'
miRNA:   3'- gGUCGgGUGGUaGGUGgGCCuCCAGc -5'
25559 3' -60.3 NC_005337.1 + 59371 0.74 0.309585
Target:  5'- gCCAGCCgCGCCAUCaCGCCCccGGcguccucGGUCGg -3'
miRNA:   3'- -GGUCGG-GUGGUAG-GUGGG--CCu------CCAGC- -5'
25559 3' -60.3 NC_005337.1 + 61677 0.73 0.338089
Target:  5'- aCCAcGCCCGCgCG-CgACCCGGAGGcgUCGg -3'
miRNA:   3'- -GGU-CGGGUG-GUaGgUGGGCCUCC--AGC- -5'
25559 3' -60.3 NC_005337.1 + 66467 0.66 0.692791
Target:  5'- uCgAGUUCACCAagaCGCaCCGaGAGGUCGg -3'
miRNA:   3'- -GgUCGGGUGGUag-GUG-GGC-CUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 66547 0.66 0.721851
Target:  5'- --cGCCgCGCCG-CCGguCCCGGAGGaCGa -3'
miRNA:   3'- gguCGG-GUGGUaGGU--GGGCCUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 68764 0.67 0.673166
Target:  5'- aCCAgGUUCACCAgcUCCACgCGGAuGGcCGa -3'
miRNA:   3'- -GGU-CGGGUGGU--AGGUGgGCCU-CCaGC- -5'
25559 3' -60.3 NC_005337.1 + 71786 0.67 0.653416
Target:  5'- gCGG-CCGCC--CCGCCCG-AGGUCGg -3'
miRNA:   3'- gGUCgGGUGGuaGGUGGGCcUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 74974 0.66 0.750261
Target:  5'- aCCAGUCgCAUCAUCUccgACCCGcAGGUg- -3'
miRNA:   3'- -GGUCGG-GUGGUAGG---UGGGCcUCCAgc -5'
25559 3' -60.3 NC_005337.1 + 75196 0.69 0.535534
Target:  5'- uCCGGCCUGuCCAcggucUUCugCCGGcccAGGUCGg -3'
miRNA:   3'- -GGUCGGGU-GGU-----AGGugGGCC---UCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 75210 0.72 0.392426
Target:  5'- aCCAGC--GCCAgCCACCCGGA-GUCGu -3'
miRNA:   3'- -GGUCGggUGGUaGGUGGGCCUcCAGC- -5'
25559 3' -60.3 NC_005337.1 + 76066 0.66 0.692791
Target:  5'- uCCAGCUCGCCcaucuUCCGCUCGGccacgcGGGcCu -3'
miRNA:   3'- -GGUCGGGUGGu----AGGUGGGCC------UCCaGc -5'
25559 3' -60.3 NC_005337.1 + 76471 0.67 0.682998
Target:  5'- cCCGGCaCCACguUCaCGuCCUcGAGGUCGa -3'
miRNA:   3'- -GGUCG-GGUGguAG-GU-GGGcCUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 76634 0.71 0.440665
Target:  5'- aCgAGCaccaCCACCGUCCAguuggugaacacguCCCGGAGGUg- -3'
miRNA:   3'- -GgUCG----GGUGGUAGGU--------------GGGCCUCCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.