miRNA display CGI


Results 61 - 77 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25559 3' -60.3 NC_005337.1 + 103382 0.66 0.750261
Target:  5'- --cGCCUGCCGUCgCuacgACCCGaAGGUCGc -3'
miRNA:   3'- gguCGGGUGGUAG-G----UGGGCcUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 103596 0.7 0.479197
Target:  5'- aCAGCCCGCCAUguuguuauaCC-CCCGGaAGGcccgCGa -3'
miRNA:   3'- gGUCGGGUGGUA---------GGuGGGCC-UCCa---GC- -5'
25559 3' -60.3 NC_005337.1 + 105451 0.67 0.653416
Target:  5'- gCUGG-CCGCCAUCUucuUCCGGGuGGUCGu -3'
miRNA:   3'- -GGUCgGGUGGUAGGu--GGGCCU-CCAGC- -5'
25559 3' -60.3 NC_005337.1 + 108695 0.66 0.731404
Target:  5'- aCGGCgaCACCGacUCCGuguuCCUGGAGGUgGg -3'
miRNA:   3'- gGUCGg-GUGGU--AGGU----GGGCCUCCAgC- -5'
25559 3' -60.3 NC_005337.1 + 111106 0.66 0.744642
Target:  5'- uCCAGCagCGCC-UCCAcgcgggucagguucuCCCGGAGGa-- -3'
miRNA:   3'- -GGUCGg-GUGGuAGGU---------------GGGCCUCCagc -5'
25559 3' -60.3 NC_005337.1 + 111525 0.7 0.470085
Target:  5'- aCCgAGCCCGCgcUCCGCCgCGuGcAGGUCGg -3'
miRNA:   3'- -GG-UCGGGUGguAGGUGG-GC-C-UCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 115609 0.66 0.721851
Target:  5'- aCCGGCCCucggAUCCGCCCGccGG-CGg -3'
miRNA:   3'- -GGUCGGGugg-UAGGUGGGCcuCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 116591 0.67 0.682998
Target:  5'- cCCAuGCCCGCCAUCaaCGCCgCGGugcGGcgCGu -3'
miRNA:   3'- -GGU-CGGGUGGUAG--GUGG-GCCu--CCa-GC- -5'
25559 3' -60.3 NC_005337.1 + 118435 0.69 0.554844
Target:  5'- -gGGCgaCACCAUCCGCCaGGAGGa-- -3'
miRNA:   3'- ggUCGg-GUGGUAGGUGGgCCUCCagc -5'
25559 3' -60.3 NC_005337.1 + 120410 0.7 0.507033
Target:  5'- gCuGCCCACgA-CCGuCCCGGAGG-CGg -3'
miRNA:   3'- gGuCGGGUGgUaGGU-GGGCCUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 121751 0.81 0.099137
Target:  5'- gCCAGCUCACgGUgaACCCGGAGGUCa -3'
miRNA:   3'- -GGUCGGGUGgUAggUGGGCCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 127692 0.67 0.633601
Target:  5'- gUCGGCCgGCuCGUCCAUCCGGAccgCGc -3'
miRNA:   3'- -GGUCGGgUG-GUAGGUGGGCCUccaGC- -5'
25559 3' -60.3 NC_005337.1 + 128412 0.66 0.740877
Target:  5'- cCCAacGCCaCGCUccCCACCaGGGGGUCc -3'
miRNA:   3'- -GGU--CGG-GUGGuaGGUGGgCCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 131635 0.66 0.712226
Target:  5'- gCCGGCgCCACCuUCCGCUUcGAGGa-- -3'
miRNA:   3'- -GGUCG-GGUGGuAGGUGGGcCUCCagc -5'
25559 3' -60.3 NC_005337.1 + 132956 0.7 0.497675
Target:  5'- gCGGCCUcguGCaCGUgCACCUGGuGGUCGu -3'
miRNA:   3'- gGUCGGG---UG-GUAgGUGGGCCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 133609 0.66 0.750261
Target:  5'- -gGGCCCGCUG-CUGCUgcaGGAGGUCa -3'
miRNA:   3'- ggUCGGGUGGUaGGUGGg--CCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 133609 0.66 0.750261
Target:  5'- -gGGCCCGCUG-CUGCUgcaGGAGGUCa -3'
miRNA:   3'- ggUCGGGUGGUaGGUGGg--CCUCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.