miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25559 3' -60.3 NC_005337.1 + 58215 0.66 0.750261
Target:  5'- gCGGCgUACCG-CCGCgCGGcGGUCa -3'
miRNA:   3'- gGUCGgGUGGUaGGUGgGCCuCCAGc -5'
25559 3' -60.3 NC_005337.1 + 132956 0.7 0.497675
Target:  5'- gCGGCCUcguGCaCGUgCACCUGGuGGUCGu -3'
miRNA:   3'- gGUCGGG---UG-GUAgGUGGGCCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 61677 0.73 0.338089
Target:  5'- aCCAcGCCCGCgCG-CgACCCGGAGGcgUCGg -3'
miRNA:   3'- -GGU-CGGGUG-GUaGgUGGGCCUCC--AGC- -5'
25559 3' -60.3 NC_005337.1 + 20605 0.66 0.731404
Target:  5'- cCCGGaCCCGCCugucgcuucAUCguCgCCGGAGGcCGu -3'
miRNA:   3'- -GGUC-GGGUGG---------UAGguG-GGCCUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 46381 0.72 0.400639
Target:  5'- gCCAGCgCgucaGCCAggUCCugCCGcGAGGUCa -3'
miRNA:   3'- -GGUCGgG----UGGU--AGGugGGC-CUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 98255 0.71 0.434559
Target:  5'- gCAGUCCgugucGCCGUCCACgaCGGuGGUCa -3'
miRNA:   3'- gGUCGGG-----UGGUAGGUGg-GCCuCCAGc -5'
25559 3' -60.3 NC_005337.1 + 10276 0.69 0.564576
Target:  5'- cCCGGaCCACCAUCCuggCGGAGGggccUCGg -3'
miRNA:   3'- -GGUCgGGUGGUAGGuggGCCUCC----AGC- -5'
25559 3' -60.3 NC_005337.1 + 51530 0.69 0.568482
Target:  5'- -gAGCCCACCAucgcacacucgcugcUCCGCUCGGAGc--- -3'
miRNA:   3'- ggUCGGGUGGU---------------AGGUGGGCCUCcagc -5'
25559 3' -60.3 NC_005337.1 + 82224 0.68 0.574353
Target:  5'- gCGGCCCGCC-UCCGCCgugcaGGAGaaGUUGc -3'
miRNA:   3'- gGUCGGGUGGuAGGUGGg----CCUC--CAGC- -5'
25559 3' -60.3 NC_005337.1 + 49020 0.66 0.731404
Target:  5'- aCCAGaCCAUCAU-CAUCgCGGuGGUCGu -3'
miRNA:   3'- -GGUCgGGUGGUAgGUGG-GCCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 115609 0.66 0.721851
Target:  5'- aCCGGCCCucggAUCCGCCCGccGG-CGg -3'
miRNA:   3'- -GGUCGGGugg-UAGGUGGGCcuCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 41027 0.66 0.721851
Target:  5'- -aGGCCCGCCAccagCCGCuCCGcGuuGUCGc -3'
miRNA:   3'- ggUCGGGUGGUa---GGUG-GGC-CucCAGC- -5'
25559 3' -60.3 NC_005337.1 + 41571 0.66 0.718971
Target:  5'- aCC-GCCCGCCGUuguagaggucgccgCCGCCCaGGaAGGUg- -3'
miRNA:   3'- -GGuCGGGUGGUA--------------GGUGGG-CC-UCCAgc -5'
25559 3' -60.3 NC_005337.1 + 19626 0.66 0.712226
Target:  5'- -aGGCCCG-CGUUCACCgGGGGGaUCc -3'
miRNA:   3'- ggUCGGGUgGUAGGUGGgCCUCC-AGc -5'
25559 3' -60.3 NC_005337.1 + 96037 0.66 0.692791
Target:  5'- uCCGcGCCCGCC--CUACUCGGcgaagaacAGGUCGu -3'
miRNA:   3'- -GGU-CGGGUGGuaGGUGGGCC--------UCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 131635 0.66 0.712226
Target:  5'- gCCGGCgCCACCuUCCGCUUcGAGGa-- -3'
miRNA:   3'- -GGUCG-GGUGGuAGGUGGGcCUCCagc -5'
25559 3' -60.3 NC_005337.1 + 66467 0.66 0.692791
Target:  5'- uCgAGUUCACCAagaCGCaCCGaGAGGUCGg -3'
miRNA:   3'- -GgUCGGGUGGUag-GUG-GGC-CUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 71786 0.67 0.653416
Target:  5'- gCGG-CCGCC--CCGCCCG-AGGUCGg -3'
miRNA:   3'- gGUCgGGUGGuaGGUGGGCcUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 95483 0.67 0.653416
Target:  5'- gCAGCCaguCCAUgCACUCGGGcGcGUCGg -3'
miRNA:   3'- gGUCGGgu-GGUAgGUGGGCCU-C-CAGC- -5'
25559 3' -60.3 NC_005337.1 + 45184 0.68 0.613783
Target:  5'- aCCGGCUgGCCGU--GCCCGGGGcgcuGUCGc -3'
miRNA:   3'- -GGUCGGgUGGUAggUGGGCCUC----CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.