miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25559 3' -60.3 NC_005337.1 + 66467 0.66 0.692791
Target:  5'- uCgAGUUCACCAagaCGCaCCGaGAGGUCGg -3'
miRNA:   3'- -GgUCGGGUGGUag-GUG-GGC-CUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 92426 0.66 0.740877
Target:  5'- aCgAGCCCGCUc-CCGCCCGacGAGGagGa -3'
miRNA:   3'- -GgUCGGGUGGuaGGUGGGC--CUCCagC- -5'
25559 3' -60.3 NC_005337.1 + 19968 0.66 0.750261
Target:  5'- aCCGGCgCCGCgAgagcUCCuCCaGGAGGUCc -3'
miRNA:   3'- -GGUCG-GGUGgU----AGGuGGgCCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 76066 0.66 0.692791
Target:  5'- uCCAGCUCGCCcaucuUCCGCUCGGccacgcGGGcCu -3'
miRNA:   3'- -GGUCGGGUGGu----AGGUGGGCC------UCCaGc -5'
25559 3' -60.3 NC_005337.1 + 133609 0.66 0.750261
Target:  5'- -gGGCCCGCUG-CUGCUgcaGGAGGUCa -3'
miRNA:   3'- ggUCGGGUGGUaGGUGGg--CCUCCAGc -5'
25559 3' -60.3 NC_005337.1 + 55684 0.66 0.701564
Target:  5'- -aAGCUCACCAUCCgcaucaacacggcGCCCauGGAGGcCc -3'
miRNA:   3'- ggUCGGGUGGUAGG-------------UGGG--CCUCCaGc -5'
25559 3' -60.3 NC_005337.1 + 78280 0.66 0.702536
Target:  5'- -gAGcCCCGCCAgcgaggUCGCCCGcauagccacgacGAGGUCGc -3'
miRNA:   3'- ggUC-GGGUGGUa-----GGUGGGC------------CUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 37063 0.66 0.712226
Target:  5'- gCCGGCUgACCAcgauggCCACCaUGGcgcGGUCGa -3'
miRNA:   3'- -GGUCGGgUGGUa-----GGUGG-GCCu--CCAGC- -5'
25559 3' -60.3 NC_005337.1 + 98116 0.66 0.712226
Target:  5'- gCCGGUCCACCGUgaccaggCACCgCGGcggcGGGUCc -3'
miRNA:   3'- -GGUCGGGUGGUAg------GUGG-GCC----UCCAGc -5'
25559 3' -60.3 NC_005337.1 + 41710 0.66 0.739934
Target:  5'- -gAGCCgGCCGUCCucgaagaACCaGGAGG-CGa -3'
miRNA:   3'- ggUCGGgUGGUAGG-------UGGgCCUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 23206 0.66 0.739934
Target:  5'- cUCAcGCCCGCggacaagcaguaCAUCCGCCgCgucauccuccaggGGAGGUCGu -3'
miRNA:   3'- -GGU-CGGGUG------------GUAGGUGG-G-------------CCUCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 20605 0.66 0.731404
Target:  5'- cCCGGaCCCGCCugucgcuucAUCguCgCCGGAGGcCGu -3'
miRNA:   3'- -GGUC-GGGUGG---------UAGguG-GGCCUCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 96037 0.66 0.692791
Target:  5'- uCCGcGCCCGCC--CUACUCGGcgaagaacAGGUCGu -3'
miRNA:   3'- -GGU-CGGGUGGuaGGUGGGCC--------UCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 131635 0.66 0.712226
Target:  5'- gCCGGCgCCACCuUCCGCUUcGAGGa-- -3'
miRNA:   3'- -GGUCG-GGUGGuAGGUGGGcCUCCagc -5'
25559 3' -60.3 NC_005337.1 + 19626 0.66 0.712226
Target:  5'- -aGGCCCG-CGUUCACCgGGGGGaUCc -3'
miRNA:   3'- ggUCGGGUgGUAGGUGGgCCUCC-AGc -5'
25559 3' -60.3 NC_005337.1 + 41571 0.66 0.718971
Target:  5'- aCC-GCCCGCCGUuguagaggucgccgCCGCCCaGGaAGGUg- -3'
miRNA:   3'- -GGuCGGGUGGUA--------------GGUGGG-CC-UCCAgc -5'
25559 3' -60.3 NC_005337.1 + 41027 0.66 0.721851
Target:  5'- -aGGCCCGCCAccagCCGCuCCGcGuuGUCGc -3'
miRNA:   3'- ggUCGGGUGGUa---GGUG-GGC-CucCAGC- -5'
25559 3' -60.3 NC_005337.1 + 49020 0.66 0.731404
Target:  5'- aCCAGaCCAUCAU-CAUCgCGGuGGUCGu -3'
miRNA:   3'- -GGUCgGGUGGUAgGUGG-GCCuCCAGC- -5'
25559 3' -60.3 NC_005337.1 + 115609 0.66 0.721851
Target:  5'- aCCGGCCCucggAUCCGCCCGccGG-CGg -3'
miRNA:   3'- -GGUCGGGugg-UAGGUGGGCcuCCaGC- -5'
25559 3' -60.3 NC_005337.1 + 93963 0.66 0.731404
Target:  5'- gCAGCaguugccuugCCGCCAU-CGCCCucgggcgaGGAGGUCa -3'
miRNA:   3'- gGUCG----------GGUGGUAgGUGGG--------CCUCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.