Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25559 | 5' | -54.3 | NC_005337.1 | + | 89297 | 0.74 | 0.540427 |
Target: 5'- cGGCGgcGAGCgUGUUGGAgcGCAGCCg -3' miRNA: 3'- -CCGCa-CUCGgACAACCUgcUGUUGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 55950 | 0.66 | 0.932803 |
Target: 5'- cGCGUGGucGCCgccaacgUGGACaGCGACCUc -3' miRNA: 3'- cCGCACU--CGGaca----ACCUGcUGUUGGA- -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 102298 | 0.66 | 0.932803 |
Target: 5'- uGGUGcaGuuCCUGgcGGACGugAGCCUg -3' miRNA: 3'- -CCGCa-CucGGACaaCCUGCugUUGGA- -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 46252 | 0.66 | 0.927546 |
Target: 5'- aGCGUGA-CCUGgauggUGGGcCGGCAcACCa -3' miRNA: 3'- cCGCACUcGGACa----ACCU-GCUGU-UGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 67189 | 0.67 | 0.920341 |
Target: 5'- cGGCGccGGGCUgcaagGUgcucaucaccaccaUGGACGGCGACUa -3' miRNA: 3'- -CCGCa-CUCGGa----CA--------------ACCUGCUGUUGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 45531 | 0.67 | 0.897564 |
Target: 5'- cGGCGUcggGAGCCgGUgcUGGAguCGGCGccGCCg -3' miRNA: 3'- -CCGCA---CUCGGaCA--ACCU--GCUGU--UGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 81126 | 0.67 | 0.890841 |
Target: 5'- aGGUGgaUGAGCUUGUUGGAC-ACGuggaaguuggACCg -3' miRNA: 3'- -CCGC--ACUCGGACAACCUGcUGU----------UGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 130246 | 0.68 | 0.872271 |
Target: 5'- cGCGUgggcuuccccgccauGAGCCUGcgGGACGuccucgucagcGCGACCg -3' miRNA: 3'- cCGCA---------------CUCGGACaaCCUGC-----------UGUUGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 22398 | 0.68 | 0.869278 |
Target: 5'- -uCGUGuaccGCCUGgaGGACGAC-ACCg -3' miRNA: 3'- ccGCACu---CGGACaaCCUGCUGuUGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 96486 | 0.68 | 0.861643 |
Target: 5'- cGGCG-GGGCCUGgccugGGaACGAUAGgCa -3' miRNA: 3'- -CCGCaCUCGGACaa---CC-UGCUGUUgGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 72433 | 0.69 | 0.811578 |
Target: 5'- cGGCGUGAGCgUGcuccGCGACGugCUc -3' miRNA: 3'- -CCGCACUCGgACaaccUGCUGUugGA- -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 99443 | 0.72 | 0.685058 |
Target: 5'- cGGCGUGGGCCaccucgUGGACGcgcGCGugCg -3' miRNA: 3'- -CCGCACUCGGaca---ACCUGC---UGUugGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 35228 | 0.72 | 0.643609 |
Target: 5'- cGGCGUGAGCgUGacGGAuuCGAUGGCCc -3' miRNA: 3'- -CCGCACUCGgACaaCCU--GCUGUUGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 82779 | 0.68 | 0.883882 |
Target: 5'- cGGCGUGAGgUUGac-GACGGgAGCCg -3' miRNA: 3'- -CCGCACUCgGACaacCUGCUgUUGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 130961 | 0.69 | 0.829027 |
Target: 5'- cGGCGUG-GCCg--UGGACGugcGCAACg- -3' miRNA: 3'- -CCGCACuCGGacaACCUGC---UGUUGga -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 54101 | 0.69 | 0.820391 |
Target: 5'- cGGCGUGuacgGGCgCUGcuacgUGGagcGCGACGGCCg -3' miRNA: 3'- -CCGCAC----UCG-GACa----ACC---UGCUGUUGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 14815 | 0.69 | 0.802596 |
Target: 5'- uGCGUGAGCgaGgacgccgUGGugGGCGuCCUu -3' miRNA: 3'- cCGCACUCGgaCa------ACCugCUGUuGGA- -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 78976 | 0.71 | 0.742718 |
Target: 5'- uGCGUGAGCgUGUUgcggauguagucggGGAUGcCGACCUc -3' miRNA: 3'- cCGCACUCGgACAA--------------CCUGCuGUUGGA- -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 99682 | 0.71 | 0.72578 |
Target: 5'- cGGCcUGGGCgUGgUGGAccCGGCGACCUu -3' miRNA: 3'- -CCGcACUCGgACaACCU--GCUGUUGGA- -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 65683 | 0.66 | 0.937814 |
Target: 5'- aGGCGcgGAGuuugucCCUGUUGG-UGcACAGCCg -3' miRNA: 3'- -CCGCa-CUC------GGACAACCuGC-UGUUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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