Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25559 | 5' | -54.3 | NC_005337.1 | + | 130246 | 0.68 | 0.872271 |
Target: 5'- cGCGUgggcuuccccgccauGAGCCUGcgGGACGuccucgucagcGCGACCg -3' miRNA: 3'- cCGCA---------------CUCGGACaaCCUGC-----------UGUUGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 81126 | 0.67 | 0.890841 |
Target: 5'- aGGUGgaUGAGCUUGUUGGAC-ACGuggaaguuggACCg -3' miRNA: 3'- -CCGC--ACUCGGACAACCUGcUGU----------UGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 45531 | 0.67 | 0.897564 |
Target: 5'- cGGCGUcggGAGCCgGUgcUGGAguCGGCGccGCCg -3' miRNA: 3'- -CCGCA---CUCGGaCA--ACCU--GCUGU--UGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 67189 | 0.67 | 0.920341 |
Target: 5'- cGGCGccGGGCUgcaagGUgcucaucaccaccaUGGACGGCGACUa -3' miRNA: 3'- -CCGCa-CUCGGa----CA--------------ACCUGCUGUUGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 46252 | 0.66 | 0.927546 |
Target: 5'- aGCGUGA-CCUGgauggUGGGcCGGCAcACCa -3' miRNA: 3'- cCGCACUcGGACa----ACCU-GCUGU-UGGa -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 102298 | 0.66 | 0.932803 |
Target: 5'- uGGUGcaGuuCCUGgcGGACGugAGCCUg -3' miRNA: 3'- -CCGCa-CucGGACaaCCUGCugUUGGA- -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 55950 | 0.66 | 0.932803 |
Target: 5'- cGCGUGGucGCCgccaacgUGGACaGCGACCUc -3' miRNA: 3'- cCGCACU--CGGaca----ACCUGcUGUUGGA- -5' |
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25559 | 5' | -54.3 | NC_005337.1 | + | 89297 | 0.74 | 0.540427 |
Target: 5'- cGGCGgcGAGCgUGUUGGAgcGCAGCCg -3' miRNA: 3'- -CCGCa-CUCGgACAACCUgcUGUUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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