miRNA display CGI


Results 1 - 20 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25560 3' -61.7 NC_005337.1 + 26749 0.66 0.675468
Target:  5'- cUCCGGUcgccgcgaaacGUGGuCGuCGUGCGacccacguccucgacGACGGCCg -3'
miRNA:   3'- -GGGCCGa----------CACC-GC-GCACGU---------------CUGCCGG- -5'
25560 3' -61.7 NC_005337.1 + 67513 0.66 0.671555
Target:  5'- gCCCaGCggcccGCGCGUGCGG-CGGUUg -3'
miRNA:   3'- -GGGcCGacac-CGCGCACGUCuGCCGG- -5'
25560 3' -61.7 NC_005337.1 + 42725 0.66 0.668618
Target:  5'- aCCGGUacGUGGCcacggccgcgccgaGCGUGCGGuGCGGgucCCg -3'
miRNA:   3'- gGGCCGa-CACCG--------------CGCACGUC-UGCC---GG- -5'
25560 3' -61.7 NC_005337.1 + 96379 0.66 0.661755
Target:  5'- aCCCGGUc---GCGCccgaGCAGGCGGCg -3'
miRNA:   3'- -GGGCCGacacCGCGca--CGUCUGCCGg -5'
25560 3' -61.7 NC_005337.1 + 114711 0.66 0.660773
Target:  5'- gCgCGGCUcaccgccGUuuacgacguccGGCGCGUGCuGGACGGgCu -3'
miRNA:   3'- -GgGCCGA-------CA-----------CCGCGCACG-UCUGCCgG- -5'
25560 3' -61.7 NC_005337.1 + 67738 0.66 0.651932
Target:  5'- aCCGGC---GGCGCGgcgcGCAGcuccagcgucuCGGCCg -3'
miRNA:   3'- gGGCCGacaCCGCGCa---CGUCu----------GCCGG- -5'
25560 3' -61.7 NC_005337.1 + 18636 0.66 0.651932
Target:  5'- gCCGGagggGUGGUGUGUGaucgcCAGGuCGGCg -3'
miRNA:   3'- gGGCCga--CACCGCGCAC-----GUCU-GCCGg -5'
25560 3' -61.7 NC_005337.1 + 80327 0.66 0.651932
Target:  5'- uCgCGGCacaGGCGCGaGCAGAacuccccgaUGGCCg -3'
miRNA:   3'- -GgGCCGacaCCGCGCaCGUCU---------GCCGG- -5'
25560 3' -61.7 NC_005337.1 + 36544 0.66 0.651932
Target:  5'- cCCCGGCgGcUGG-GCG-GCGccGGCGaGCCa -3'
miRNA:   3'- -GGGCCGaC-ACCgCGCaCGU--CUGC-CGG- -5'
25560 3' -61.7 NC_005337.1 + 110333 0.66 0.648981
Target:  5'- gCCCGGCcG-GGCgGCGUcgcgcgcgccugccGCGGGCGcGCg -3'
miRNA:   3'- -GGGCCGaCaCCG-CGCA--------------CGUCUGC-CGg -5'
25560 3' -61.7 NC_005337.1 + 38967 0.66 0.642094
Target:  5'- aUCGGCgcccgaGUG-CGCGUGCGucacCGGCCg -3'
miRNA:   3'- gGGCCGa-----CACcGCGCACGUcu--GCCGG- -5'
25560 3' -61.7 NC_005337.1 + 83391 0.66 0.642094
Target:  5'- uUCCGGCgcacguUGUaGGCG-GUGCugaAGAUGGCg -3'
miRNA:   3'- -GGGCCG------ACA-CCGCgCACG---UCUGCCGg -5'
25560 3' -61.7 NC_005337.1 + 55727 0.66 0.642094
Target:  5'- aCCCGcuGCUGUacGUGCcccgGCAGAUGGUCg -3'
miRNA:   3'- -GGGC--CGACAc-CGCGca--CGUCUGCCGG- -5'
25560 3' -61.7 NC_005337.1 + 66135 0.66 0.642094
Target:  5'- gCCC-GCUaggGGCGCGcGCGGccacCGGCCc -3'
miRNA:   3'- -GGGcCGAca-CCGCGCaCGUCu---GCCGG- -5'
25560 3' -61.7 NC_005337.1 + 83089 0.66 0.642094
Target:  5'- gUCCGGC-GUaGCGgGUGaC-GAUGGCCa -3'
miRNA:   3'- -GGGCCGaCAcCGCgCAC-GuCUGCCGG- -5'
25560 3' -61.7 NC_005337.1 + 99619 0.66 0.64111
Target:  5'- -aCGGCUacGUcGuGCGCGUGCGGgacacggacgugcGCGGCa -3'
miRNA:   3'- ggGCCGA--CA-C-CGCGCACGUC-------------UGCCGg -5'
25560 3' -61.7 NC_005337.1 + 97122 0.66 0.636188
Target:  5'- gCUCGGCgGUGGCggagcugcGCGUGCccuucgucgucuccuAcGACGGCg -3'
miRNA:   3'- -GGGCCGaCACCG--------CGCACG---------------U-CUGCCGg -5'
25560 3' -61.7 NC_005337.1 + 66422 0.66 0.632249
Target:  5'- aCCGcGCUGcaGGC-CGUGaAGGCGGUCu -3'
miRNA:   3'- gGGC-CGACa-CCGcGCACgUCUGCCGG- -5'
25560 3' -61.7 NC_005337.1 + 5985 0.66 0.632249
Target:  5'- aCgGGCca-GGCGCGcgcguUGCAGACcGCCg -3'
miRNA:   3'- gGgCCGacaCCGCGC-----ACGUCUGcCGG- -5'
25560 3' -61.7 NC_005337.1 + 24202 0.66 0.632249
Target:  5'- aCCGGCga-GGCGCGcgucgagGUGGAgcugccccCGGCCg -3'
miRNA:   3'- gGGCCGacaCCGCGCa------CGUCU--------GCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.