miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25560 5' -51 NC_005337.1 + 81237 0.66 0.98401
Target:  5'- -aGGCCGU-UGCGCCGgcaGCUCCc---- -3'
miRNA:   3'- caCCGGUAcAUGCGGU---UGAGGuauuu -5'
25560 5' -51 NC_005337.1 + 29590 0.66 0.981953
Target:  5'- -cGGCgGUGUccgACGCgGACgCCAUGAc -3'
miRNA:   3'- caCCGgUACA---UGCGgUUGaGGUAUUu -5'
25560 5' -51 NC_005337.1 + 8042 0.66 0.981953
Target:  5'- -cGGCCuugcgGaGgGCCAGCUCCAUc-- -3'
miRNA:   3'- caCCGGua---CaUgCGGUUGAGGUAuuu -5'
25560 5' -51 NC_005337.1 + 65347 0.66 0.981299
Target:  5'- -cGGCCuggacGUGaagaacguccagcuCGUCAACUCCAUAGAc -3'
miRNA:   3'- caCCGGua---CAU--------------GCGGUUGAGGUAUUU- -5'
25560 5' -51 NC_005337.1 + 44439 0.66 0.974589
Target:  5'- -aGGCCGUGaagcGCGCCAccuGCUgCGUGu- -3'
miRNA:   3'- caCCGGUACa---UGCGGU---UGAgGUAUuu -5'
25560 5' -51 NC_005337.1 + 99488 0.67 0.972886
Target:  5'- cGUGGCCGUGcgGCGCUAcgcggacugccugguGCUCUg---- -3'
miRNA:   3'- -CACCGGUACa-UGCGGU---------------UGAGGuauuu -5'
25560 5' -51 NC_005337.1 + 126370 0.67 0.971706
Target:  5'- -aGGaCAUGUACGCCAGgUUCAc--- -3'
miRNA:   3'- caCCgGUACAUGCGGUUgAGGUauuu -5'
25560 5' -51 NC_005337.1 + 48806 0.67 0.971706
Target:  5'- gGUGGCCGUGUuCGaCAGCUCg----- -3'
miRNA:   3'- -CACCGGUACAuGCgGUUGAGguauuu -5'
25560 5' -51 NC_005337.1 + 131196 0.67 0.971706
Target:  5'- -gGGCCA---GCGCCc-CUCCGUGGAg -3'
miRNA:   3'- caCCGGUacaUGCGGuuGAGGUAUUU- -5'
25560 5' -51 NC_005337.1 + 108377 0.67 0.971102
Target:  5'- -gGGCCAUcuacgacuccaugcaGUACacguacaagaucacgGCCAACUCCGUGu- -3'
miRNA:   3'- caCCGGUA---------------CAUG---------------CGGUUGAGGUAUuu -5'
25560 5' -51 NC_005337.1 + 26486 0.67 0.968595
Target:  5'- cGUGGagaCA-GUaccGCGCCAugUCCAUAc- -3'
miRNA:   3'- -CACCg--GUaCA---UGCGGUugAGGUAUuu -5'
25560 5' -51 NC_005337.1 + 54039 0.67 0.968595
Target:  5'- cUGGagAUGUACGCCGACcCCGa--- -3'
miRNA:   3'- cACCggUACAUGCGGUUGaGGUauuu -5'
25560 5' -51 NC_005337.1 + 73340 0.67 0.966616
Target:  5'- -aGGCCAaggagacgaaccgcgUGUACGCCAuccugcaggaACUCUcgGAGg -3'
miRNA:   3'- caCCGGU---------------ACAUGCGGU----------UGAGGuaUUU- -5'
25560 5' -51 NC_005337.1 + 18824 0.67 0.965248
Target:  5'- --cGCCAgcgcgucGUACGCCGGCUCUAUc-- -3'
miRNA:   3'- cacCGGUa------CAUGCGGUUGAGGUAuuu -5'
25560 5' -51 NC_005337.1 + 124810 0.67 0.965248
Target:  5'- -cGGCgGUGgacGCGCCggUUCCAg--- -3'
miRNA:   3'- caCCGgUACa--UGCGGuuGAGGUauuu -5'
25560 5' -51 NC_005337.1 + 69931 0.67 0.965248
Target:  5'- -cGGCUGUGUaccgccgcgGCGCCAcGCUCCGc--- -3'
miRNA:   3'- caCCGGUACA---------UGCGGU-UGAGGUauuu -5'
25560 5' -51 NC_005337.1 + 10448 0.67 0.961658
Target:  5'- gGUGcGCgCGUcGUGCGCCAGgacCUCCGUGu- -3'
miRNA:   3'- -CAC-CG-GUA-CAUGCGGUU---GAGGUAUuu -5'
25560 5' -51 NC_005337.1 + 29036 0.67 0.961658
Target:  5'- cGUGGUgGUGgggGCGCCAcGCcgCCAUAu- -3'
miRNA:   3'- -CACCGgUACa--UGCGGU-UGa-GGUAUuu -5'
25560 5' -51 NC_005337.1 + 17938 0.67 0.958214
Target:  5'- aUGGCCcgGcgcUGCGCCcgcagcagccgcaccGCUCCAUGGAg -3'
miRNA:   3'- cACCGGuaC---AUGCGGu--------------UGAGGUAUUU- -5'
25560 5' -51 NC_005337.1 + 99535 0.67 0.957819
Target:  5'- -cGGCCcgGUGCGCCGccgacuGCUCgCGcGAGg -3'
miRNA:   3'- caCCGGuaCAUGCGGU------UGAG-GUaUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.