miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25561 5' -59.3 NC_005337.1 + 63276 0.66 0.778297
Target:  5'- --aGCACGGucugCCCggucucgauguagagCCCGCUCAGCa -3'
miRNA:   3'- ggaCGUGCCcua-GGG---------------GGGCGAGUUGa -5'
25561 5' -59.3 NC_005337.1 + 70013 0.66 0.774639
Target:  5'- uCCgGCGCGcccGGGUCCCagagCCGCcgCAGCg -3'
miRNA:   3'- -GGaCGUGC---CCUAGGGg---GGCGa-GUUGa -5'
25561 5' -59.3 NC_005337.1 + 23822 0.66 0.765412
Target:  5'- gCUGCAcgccuCGGaGGUCCUgCCCGCguucgUCGACUg -3'
miRNA:   3'- gGACGU-----GCC-CUAGGG-GGGCG-----AGUUGA- -5'
25561 5' -59.3 NC_005337.1 + 41686 0.66 0.765412
Target:  5'- gUCUGCACGGGcUCCCUCUccaccacgGCUUcuCg -3'
miRNA:   3'- -GGACGUGCCCuAGGGGGG--------CGAGuuGa -5'
25561 5' -59.3 NC_005337.1 + 83062 0.66 0.765412
Target:  5'- cCCUGCuCcGGAUCCCCagCCgGCUCAu-- -3'
miRNA:   3'- -GGACGuGcCCUAGGGG--GG-CGAGUuga -5'
25561 5' -59.3 NC_005337.1 + 110604 0.66 0.762621
Target:  5'- aCUGCGCGagcaGGAugccggggucgaggUCCCUCCGgaCGACg -3'
miRNA:   3'- gGACGUGC----CCU--------------AGGGGGGCgaGUUGa -5'
25561 5' -59.3 NC_005337.1 + 122677 0.66 0.756071
Target:  5'- gCCcGC-CGGGuGUgCCCCUGCUCG-CUg -3'
miRNA:   3'- -GGaCGuGCCC-UAgGGGGGCGAGUuGA- -5'
25561 5' -59.3 NC_005337.1 + 121293 0.66 0.746624
Target:  5'- cCCUGUACGGGuaccUgUCCUCGacCUCGACa -3'
miRNA:   3'- -GGACGUGCCCu---AgGGGGGC--GAGUUGa -5'
25561 5' -59.3 NC_005337.1 + 86083 0.66 0.746624
Target:  5'- aUUGUugGGGGUacagCUCCCGCagCAGCg -3'
miRNA:   3'- gGACGugCCCUAg---GGGGGCGa-GUUGa -5'
25561 5' -59.3 NC_005337.1 + 131564 0.66 0.737081
Target:  5'- uCCUGCACGuGGA-CCUCaaGCcCGACa -3'
miRNA:   3'- -GGACGUGC-CCUaGGGGggCGaGUUGa -5'
25561 5' -59.3 NC_005337.1 + 61899 0.66 0.737081
Target:  5'- cCCUGCACcacGAUgUCCCCGauCUCGACg -3'
miRNA:   3'- -GGACGUGcc-CUAgGGGGGC--GAGUUGa -5'
25561 5' -59.3 NC_005337.1 + 124247 0.66 0.727449
Target:  5'- gCCUGCGUGGaGGUCCCcgaggacaucguCCCGgaCGACg -3'
miRNA:   3'- -GGACGUGCC-CUAGGG------------GGGCgaGUUGa -5'
25561 5' -59.3 NC_005337.1 + 19582 0.66 0.727449
Target:  5'- gCC-GCGCGaGGAUCUCCaCUGCgucCAGCg -3'
miRNA:   3'- -GGaCGUGC-CCUAGGGG-GGCGa--GUUGa -5'
25561 5' -59.3 NC_005337.1 + 26606 0.67 0.717739
Target:  5'- ---aCGCGGGGUCCUCCaGCUCcACg -3'
miRNA:   3'- ggacGUGCCCUAGGGGGgCGAGuUGa -5'
25561 5' -59.3 NC_005337.1 + 50719 0.67 0.717739
Target:  5'- uUUGCGCGGGAcugCCgUCCCGCgacgaGACg -3'
miRNA:   3'- gGACGUGCCCUa--GG-GGGGCGag---UUGa -5'
25561 5' -59.3 NC_005337.1 + 104144 0.67 0.717739
Target:  5'- cCUUGC-CGauaaaGGAaacaUCCCCCCGCUgAACc -3'
miRNA:   3'- -GGACGuGC-----CCU----AGGGGGGCGAgUUGa -5'
25561 5' -59.3 NC_005337.1 + 50325 0.67 0.716764
Target:  5'- cCCUGCGCGGaccgcccGGUaCCCgCCGCcCGGCc -3'
miRNA:   3'- -GGACGUGCC-------CUA-GGGgGGCGaGUUGa -5'
25561 5' -59.3 NC_005337.1 + 98691 0.67 0.707958
Target:  5'- uCCgGCG-GGGAUCCgCCUCGCUaGGCa -3'
miRNA:   3'- -GGaCGUgCCCUAGG-GGGGCGAgUUGa -5'
25561 5' -59.3 NC_005337.1 + 128353 0.67 0.707958
Target:  5'- --cGC-CGGcGUCUCCCCGCUCGcGCUc -3'
miRNA:   3'- ggaCGuGCCcUAGGGGGGCGAGU-UGA- -5'
25561 5' -59.3 NC_005337.1 + 91267 0.67 0.707958
Target:  5'- gCUGCGCGaGGccAUCCuCUCCGCcaaguUCAACg -3'
miRNA:   3'- gGACGUGC-CC--UAGG-GGGGCG-----AGUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.