Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25561 | 5' | -59.3 | NC_005337.1 | + | 101781 | 0.97 | 0.0095 |
Target: 5'- aCCUGCACGGGAU-CCCCCGCUCAACUc -3' miRNA: 3'- -GGACGUGCCCUAgGGGGGCGAGUUGA- -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 114635 | 0.77 | 0.197823 |
Target: 5'- gCUGUgcgaccACGGGAUCCCCCCGgUgAACg -3' miRNA: 3'- gGACG------UGCCCUAGGGGGGCgAgUUGa -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 103663 | 0.72 | 0.410237 |
Target: 5'- uUCUGCGCGGaGAagcUCUCCCGCUCGcaGCUg -3' miRNA: 3'- -GGACGUGCC-CUa--GGGGGGCGAGU--UGA- -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 105188 | 0.7 | 0.490896 |
Target: 5'- cCCUGCuucGCGGGGUCCgCggccugggggCCGCUgAGCUg -3' miRNA: 3'- -GGACG---UGCCCUAGGgG----------GGCGAgUUGA- -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 42575 | 0.7 | 0.499374 |
Target: 5'- gCCUGCA-GGuGAagUCCCCCaucuccuucccggCGCUCAGCUu -3' miRNA: 3'- -GGACGUgCC-CU--AGGGGG-------------GCGAGUUGA- -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 649 | 0.7 | 0.529048 |
Target: 5'- uCCUGCACGGcGAcggugaCCUCCUGCagCAGCa -3' miRNA: 3'- -GGACGUGCC-CUa-----GGGGGGCGa-GUUGa -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 649 | 0.7 | 0.529048 |
Target: 5'- uCCUGCACGGcGAcggugaCCUCCUGCagCAGCa -3' miRNA: 3'- -GGACGUGCC-CUa-----GGGGGGCGa-GUUGa -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 37899 | 0.69 | 0.585127 |
Target: 5'- gCCUGCuCGGGcgCgaccgggucgauagCCCCCGCUUcGCg -3' miRNA: 3'- -GGACGuGCCCuaG--------------GGGGGCGAGuUGa -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 31777 | 0.68 | 0.618148 |
Target: 5'- gCUGCuCGGGAggagcacgUCCUCCaCGCUgAGCa -3' miRNA: 3'- gGACGuGCCCU--------AGGGGG-GCGAgUUGa -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 91525 | 0.67 | 0.668301 |
Target: 5'- --cGCGCGGGA-CCCgCaccgcaCGCUCGGCg -3' miRNA: 3'- ggaCGUGCCCUaGGG-Gg-----GCGAGUUGa -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 96521 | 0.67 | 0.678278 |
Target: 5'- gCUGCGCGagaaGGUCUCCgCCGCcgUCGACUu -3' miRNA: 3'- gGACGUGCc---CUAGGGG-GGCG--AGUUGA- -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 96828 | 0.67 | 0.702059 |
Target: 5'- aCCUGCgggugcgcagccgcgGCGuGGcguUCCCCCgGCUCcGCg -3' miRNA: 3'- -GGACG---------------UGC-CCu--AGGGGGgCGAGuUGa -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 98691 | 0.67 | 0.707958 |
Target: 5'- uCCgGCG-GGGAUCCgCCUCGCUaGGCa -3' miRNA: 3'- -GGaCGUgCCCUAGG-GGGGCGAgUUGa -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 91267 | 0.67 | 0.707958 |
Target: 5'- gCUGCGCGaGGccAUCCuCUCCGCcaaguUCAACg -3' miRNA: 3'- gGACGUGC-CC--UAGG-GGGGCG-----AGUUGa -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 128353 | 0.67 | 0.707958 |
Target: 5'- --cGC-CGGcGUCUCCCCGCUCGcGCUc -3' miRNA: 3'- ggaCGuGCCcUAGGGGGGCGAGU-UGA- -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 50325 | 0.67 | 0.716764 |
Target: 5'- cCCUGCGCGGaccgcccGGUaCCCgCCGCcCGGCc -3' miRNA: 3'- -GGACGUGCC-------CUA-GGGgGGCGaGUUGa -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 50719 | 0.67 | 0.717739 |
Target: 5'- uUUGCGCGGGAcugCCgUCCCGCgacgaGACg -3' miRNA: 3'- gGACGUGCCCUa--GG-GGGGCGag---UUGa -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 26606 | 0.67 | 0.717739 |
Target: 5'- ---aCGCGGGGUCCUCCaGCUCcACg -3' miRNA: 3'- ggacGUGCCCUAGGGGGgCGAGuUGa -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 104144 | 0.67 | 0.717739 |
Target: 5'- cCUUGC-CGauaaaGGAaacaUCCCCCCGCUgAACc -3' miRNA: 3'- -GGACGuGC-----CCU----AGGGGGGCGAgUUGa -5' |
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25561 | 5' | -59.3 | NC_005337.1 | + | 19582 | 0.66 | 0.727449 |
Target: 5'- gCC-GCGCGaGGAUCUCCaCUGCgucCAGCg -3' miRNA: 3'- -GGaCGUGC-CCUAGGGG-GGCGa--GUUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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