miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25561 5' -59.3 NC_005337.1 + 649 0.7 0.529048
Target:  5'- uCCUGCACGGcGAcggugaCCUCCUGCagCAGCa -3'
miRNA:   3'- -GGACGUGCC-CUa-----GGGGGGCGa-GUUGa -5'
25561 5' -59.3 NC_005337.1 + 83062 0.66 0.765412
Target:  5'- cCCUGCuCcGGAUCCCCagCCgGCUCAu-- -3'
miRNA:   3'- -GGACGuGcCCUAGGGG--GG-CGAGUuga -5'
25561 5' -59.3 NC_005337.1 + 110604 0.66 0.762621
Target:  5'- aCUGCGCGagcaGGAugccggggucgaggUCCCUCCGgaCGACg -3'
miRNA:   3'- gGACGUGC----CCU--------------AGGGGGGCgaGUUGa -5'
25561 5' -59.3 NC_005337.1 + 122677 0.66 0.756071
Target:  5'- gCCcGC-CGGGuGUgCCCCUGCUCG-CUg -3'
miRNA:   3'- -GGaCGuGCCC-UAgGGGGGCGAGUuGA- -5'
25561 5' -59.3 NC_005337.1 + 121293 0.66 0.746624
Target:  5'- cCCUGUACGGGuaccUgUCCUCGacCUCGACa -3'
miRNA:   3'- -GGACGUGCCCu---AgGGGGGC--GAGUUGa -5'
25561 5' -59.3 NC_005337.1 + 86083 0.66 0.746624
Target:  5'- aUUGUugGGGGUacagCUCCCGCagCAGCg -3'
miRNA:   3'- gGACGugCCCUAg---GGGGGCGa-GUUGa -5'
25561 5' -59.3 NC_005337.1 + 131564 0.66 0.737081
Target:  5'- uCCUGCACGuGGA-CCUCaaGCcCGACa -3'
miRNA:   3'- -GGACGUGC-CCUaGGGGggCGaGUUGa -5'
25561 5' -59.3 NC_005337.1 + 19582 0.66 0.727449
Target:  5'- gCC-GCGCGaGGAUCUCCaCUGCgucCAGCg -3'
miRNA:   3'- -GGaCGUGC-CCUAGGGG-GGCGa--GUUGa -5'
25561 5' -59.3 NC_005337.1 + 26606 0.67 0.717739
Target:  5'- ---aCGCGGGGUCCUCCaGCUCcACg -3'
miRNA:   3'- ggacGUGCCCUAGGGGGgCGAGuUGa -5'
25561 5' -59.3 NC_005337.1 + 50719 0.67 0.717739
Target:  5'- uUUGCGCGGGAcugCCgUCCCGCgacgaGACg -3'
miRNA:   3'- gGACGUGCCCUa--GG-GGGGCGag---UUGa -5'
25561 5' -59.3 NC_005337.1 + 128353 0.67 0.707958
Target:  5'- --cGC-CGGcGUCUCCCCGCUCGcGCUc -3'
miRNA:   3'- ggaCGuGCCcUAGGGGGGCGAGU-UGA- -5'
25561 5' -59.3 NC_005337.1 + 96828 0.67 0.702059
Target:  5'- aCCUGCgggugcgcagccgcgGCGuGGcguUCCCCCgGCUCcGCg -3'
miRNA:   3'- -GGACG---------------UGC-CCu--AGGGGGgCGAGuUGa -5'
25561 5' -59.3 NC_005337.1 + 31777 0.68 0.618148
Target:  5'- gCUGCuCGGGAggagcacgUCCUCCaCGCUgAGCa -3'
miRNA:   3'- gGACGuGCCCU--------AGGGGG-GCGAgUUGa -5'
25561 5' -59.3 NC_005337.1 + 37899 0.69 0.585127
Target:  5'- gCCUGCuCGGGcgCgaccgggucgauagCCCCCGCUUcGCg -3'
miRNA:   3'- -GGACGuGCCCuaG--------------GGGGGCGAGuUGa -5'
25561 5' -59.3 NC_005337.1 + 649 0.7 0.529048
Target:  5'- uCCUGCACGGcGAcggugaCCUCCUGCagCAGCa -3'
miRNA:   3'- -GGACGUGCC-CUa-----GGGGGGCGa-GUUGa -5'
25561 5' -59.3 NC_005337.1 + 42575 0.7 0.499374
Target:  5'- gCCUGCA-GGuGAagUCCCCCaucuccuucccggCGCUCAGCUu -3'
miRNA:   3'- -GGACGUgCC-CU--AGGGGG-------------GCGAGUUGA- -5'
25561 5' -59.3 NC_005337.1 + 105188 0.7 0.490896
Target:  5'- cCCUGCuucGCGGGGUCCgCggccugggggCCGCUgAGCUg -3'
miRNA:   3'- -GGACG---UGCCCUAGGgG----------GGCGAgUUGA- -5'
25561 5' -59.3 NC_005337.1 + 103663 0.72 0.410237
Target:  5'- uUCUGCGCGGaGAagcUCUCCCGCUCGcaGCUg -3'
miRNA:   3'- -GGACGUGCC-CUa--GGGGGGCGAGU--UGA- -5'
25561 5' -59.3 NC_005337.1 + 114635 0.77 0.197823
Target:  5'- gCUGUgcgaccACGGGAUCCCCCCGgUgAACg -3'
miRNA:   3'- gGACG------UGCCCUAGGGGGGCgAgUUGa -5'
25561 5' -59.3 NC_005337.1 + 63276 0.66 0.778297
Target:  5'- --aGCACGGucugCCCggucucgauguagagCCCGCUCAGCa -3'
miRNA:   3'- ggaCGUGCCcua-GGG---------------GGGCGAGUUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.