miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 3' -58.1 NC_005337.1 + 64395 0.66 0.794793
Target:  5'- cGGAGCgGCGGcacagguccagcagcGGCCgcuuggcggccacCAGCGUGUCc -3'
miRNA:   3'- uCCUCGaCGUC---------------UCGGa------------GUCGCACAGc -5'
25562 3' -58.1 NC_005337.1 + 19115 0.66 0.794793
Target:  5'- aGGGAGCUucugucggacGCAG-GCCUCcgccacGCGcGUCGu -3'
miRNA:   3'- -UCCUCGA----------CGUCuCGGAGu-----CGCaCAGC- -5'
25562 3' -58.1 NC_005337.1 + 14681 0.66 0.794793
Target:  5'- cAGGAGUUGCAGcGC-UCGGCGaccagGUgCGg -3'
miRNA:   3'- -UCCUCGACGUCuCGgAGUCGCa----CA-GC- -5'
25562 3' -58.1 NC_005337.1 + 107082 0.66 0.785642
Target:  5'- aGGGGGUgccgcugugcGCGGAGCCUCAaGaCGUcGUCu -3'
miRNA:   3'- -UCCUCGa---------CGUCUCGGAGU-C-GCA-CAGc -5'
25562 3' -58.1 NC_005337.1 + 10212 0.66 0.776351
Target:  5'- aAGGAGCUGUAGAaGCCguaCA-CG-GUCa -3'
miRNA:   3'- -UCCUCGACGUCU-CGGa--GUcGCaCAGc -5'
25562 3' -58.1 NC_005337.1 + 30161 0.66 0.76693
Target:  5'- cGGGGUagaUGuCGGAGUagcgCUCGGCGaUGUCGa -3'
miRNA:   3'- uCCUCG---AC-GUCUCG----GAGUCGC-ACAGC- -5'
25562 3' -58.1 NC_005337.1 + 51634 0.67 0.737979
Target:  5'- -cGAGCUGCGGucGGCgCUCcGCG-GUCGc -3'
miRNA:   3'- ucCUCGACGUC--UCG-GAGuCGCaCAGC- -5'
25562 3' -58.1 NC_005337.1 + 81830 0.67 0.707187
Target:  5'- cGGGAGCUcGCuGgcucguuGGCCUCGGCGaaggcggcGUCGa -3'
miRNA:   3'- -UCCUCGA-CGuC-------UCGGAGUCGCa-------CAGC- -5'
25562 3' -58.1 NC_005337.1 + 25047 0.67 0.69812
Target:  5'- gAGGAGCUGCugcGcGCCgugcgggCGGCGUucGUCa -3'
miRNA:   3'- -UCCUCGACGu--CuCGGa------GUCGCA--CAGc -5'
25562 3' -58.1 NC_005337.1 + 974 0.67 0.687993
Target:  5'- uGGAGCgGCGGGGCUggcgCGGCGcG-CGg -3'
miRNA:   3'- uCCUCGaCGUCUCGGa---GUCGCaCaGC- -5'
25562 3' -58.1 NC_005337.1 + 974 0.67 0.687993
Target:  5'- uGGAGCgGCGGGGCUggcgCGGCGcG-CGg -3'
miRNA:   3'- uCCUCGaCGUCUCGGa---GUCGCaCaGC- -5'
25562 3' -58.1 NC_005337.1 + 104709 0.68 0.667607
Target:  5'- gAGGAGCUGCuGuGCCaccugagCAGCGaGUgGg -3'
miRNA:   3'- -UCCUCGACGuCuCGGa------GUCGCaCAgC- -5'
25562 3' -58.1 NC_005337.1 + 107673 0.68 0.647105
Target:  5'- uGGAGCUGgAGGaCC-CcGCGUGUCGc -3'
miRNA:   3'- uCCUCGACgUCUcGGaGuCGCACAGC- -5'
25562 3' -58.1 NC_005337.1 + 99425 0.69 0.626555
Target:  5'- cGGGuGCgUGCuGAGCCgCGGCGUGg-- -3'
miRNA:   3'- -UCCuCG-ACGuCUCGGaGUCGCACagc -5'
25562 3' -58.1 NC_005337.1 + 21944 0.7 0.565247
Target:  5'- -cGAGCUcGCGGAGUCaUCGGCGUGa-- -3'
miRNA:   3'- ucCUCGA-CGUCUCGG-AGUCGCACagc -5'
25562 3' -58.1 NC_005337.1 + 116532 0.7 0.565247
Target:  5'- uGGAGCUGCAGAGCgUgAuCGUGa-- -3'
miRNA:   3'- uCCUCGACGUCUCGgAgUcGCACagc -5'
25562 3' -58.1 NC_005337.1 + 67769 0.7 0.555155
Target:  5'- cGGccGGCUGCAGcGGCUcCAGCGaGUCGa -3'
miRNA:   3'- uCC--UCGACGUC-UCGGaGUCGCaCAGC- -5'
25562 3' -58.1 NC_005337.1 + 131776 0.77 0.210973
Target:  5'- cGGcAGCUGCuGAGCCUCGGCGcggacGUCa -3'
miRNA:   3'- uCC-UCGACGuCUCGGAGUCGCa----CAGc -5'
25562 3' -58.1 NC_005337.1 + 101546 1.08 0.001686
Target:  5'- gAGGAGCUGCAGAGCCUCAGCGUGUCGc -3'
miRNA:   3'- -UCCUCGACGUCUCGGAGUCGCACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.