miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 28532 0.66 0.933968
Target:  5'- gGCGCAC-UCGUccucggaguagaGGAUccggACGCGC-CCa -3'
miRNA:   3'- aCGCGUGaAGUA------------CCUGa---UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 133372 0.66 0.933968
Target:  5'- cGcCGCGCUcgUCGcgcucGGGCUccugcucgGCGCGCUCUu -3'
miRNA:   3'- aC-GCGUGA--AGUa----CCUGA--------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 3466 0.66 0.93896
Target:  5'- gGCgGCACUgggUCGUcGcGACUGCGCGUgCUg -3'
miRNA:   3'- aCG-CGUGA---AGUA-C-CUGAUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 44368 0.66 0.941836
Target:  5'- cGUGCGCgacacguccaacaUCGUGaACaGCGCGCUCUc -3'
miRNA:   3'- aCGCGUGa------------AGUACcUGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 102150 0.66 0.933968
Target:  5'- gGUGUACguggaCAcgcUGGACaUGCGCGCcgCCa -3'
miRNA:   3'- aCGCGUGaa---GU---ACCUG-AUGCGCGa-GG- -5'
25562 5' -53.8 NC_005337.1 + 95000 0.66 0.93896
Target:  5'- cGCGUACUUgcgcgaCAgcggcGGcuGCUGCGCGUUCUu -3'
miRNA:   3'- aCGCGUGAA------GUa----CC--UGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 28264 0.66 0.93896
Target:  5'- cGCGCACgugCGUGGugUcCGUGaUCa -3'
miRNA:   3'- aCGCGUGaa-GUACCugAuGCGCgAGg -5'
25562 5' -53.8 NC_005337.1 + 114970 0.66 0.933968
Target:  5'- cGCGCuccgcCUaCGUGGGCgGCGauauaguccuaCGCUCCa -3'
miRNA:   3'- aCGCGu----GAaGUACCUGaUGC-----------GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 132095 0.67 0.928724
Target:  5'- aGCGCG--UCGUGGACacgcugguCGCGCUg- -3'
miRNA:   3'- aCGCGUgaAGUACCUGau------GCGCGAgg -5'
25562 5' -53.8 NC_005337.1 + 102835 0.67 0.928724
Target:  5'- aGaCGCGCgUCAUGGuCgggcCGCGCgCCa -3'
miRNA:   3'- aC-GCGUGaAGUACCuGau--GCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 95815 0.67 0.925457
Target:  5'- cGCGCACcgCAUgaaggcguacgccucGGGCgugaugACGCGCcCCu -3'
miRNA:   3'- aCGCGUGaaGUA---------------CCUGa-----UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 104561 0.67 0.923229
Target:  5'- cGCGCGCg-CGUGcGCgccuCGCGCgUCCg -3'
miRNA:   3'- aCGCGUGaaGUACcUGau--GCGCG-AGG- -5'
25562 5' -53.8 NC_005337.1 + 120286 0.67 0.928724
Target:  5'- cGCGCAaguaCAUGGcCgGCaCGCUCCg -3'
miRNA:   3'- aCGCGUgaa-GUACCuGaUGcGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 69109 0.67 0.923229
Target:  5'- gGUGCACcUCGUcugcGGGCgagcCGCGgUCCa -3'
miRNA:   3'- aCGCGUGaAGUA----CCUGau--GCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 35779 0.67 0.923229
Target:  5'- gGCGCGugUCAUgacGGACgccgccgGCGCGCcCCu -3'
miRNA:   3'- aCGCGUgaAGUA---CCUGa------UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 71910 0.67 0.915115
Target:  5'- cUGCGCACcgccuucgacgacagCGUGGACcccgaggUGCGCGagaUCCc -3'
miRNA:   3'- -ACGCGUGaa-------------GUACCUG-------AUGCGCg--AGG- -5'
25562 5' -53.8 NC_005337.1 + 93830 0.67 0.911488
Target:  5'- gGCGUcg-UCAaGGGCcgUGCGCUCCg -3'
miRNA:   3'- aCGCGugaAGUaCCUGauGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 57481 0.67 0.917483
Target:  5'- cGCGCACcUCAcugaggugcuggUGGACaGCaucaucgaGCGCUUCg -3'
miRNA:   3'- aCGCGUGaAGU------------ACCUGaUG--------CGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 124794 0.67 0.928724
Target:  5'- cUGCGCGCag-AUGGGCcggcgguggACGCGCcgguUCCa -3'
miRNA:   3'- -ACGCGUGaagUACCUGa--------UGCGCG----AGG- -5'
25562 5' -53.8 NC_005337.1 + 48855 0.67 0.917483
Target:  5'- --aGCAUcgUCAUGGACgagUGCGCGUcCCc -3'
miRNA:   3'- acgCGUGa-AGUACCUG---AUGCGCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.