miRNA display CGI


Results 61 - 80 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 57602 0.67 0.911488
Target:  5'- cUGCuGCGCUUCGUGGAgcccgaGCaGCUCa -3'
miRNA:   3'- -ACG-CGUGAAGUACCUgaug--CG-CGAGg -5'
25562 5' -53.8 NC_005337.1 + 57481 0.67 0.917483
Target:  5'- cGCGCACcUCAcugaggugcuggUGGACaGCaucaucgaGCGCUUCg -3'
miRNA:   3'- aCGCGUGaAGU------------ACCUGaUG--------CGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 52781 0.67 0.905243
Target:  5'- cGCGaCGCgUCGUGGuACgcCGCGUacUCCg -3'
miRNA:   3'- aCGC-GUGaAGUACC-UGauGCGCG--AGG- -5'
25562 5' -53.8 NC_005337.1 + 35779 0.67 0.923229
Target:  5'- gGCGCGugUCAUgacGGACgccgccgGCGCGCcCCu -3'
miRNA:   3'- aCGCGUgaAGUA---CCUGa------UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 104561 0.67 0.923229
Target:  5'- cGCGCGCg-CGUGcGCgccuCGCGCgUCCg -3'
miRNA:   3'- aCGCGUGaaGUACcUGau--GCGCG-AGG- -5'
25562 5' -53.8 NC_005337.1 + 100560 0.67 0.923229
Target:  5'- aUGCGCAgcccucagaUUUcCAUGGGCcucaucuCGCGCUCg -3'
miRNA:   3'- -ACGCGU---------GAA-GUACCUGau-----GCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 71910 0.67 0.915115
Target:  5'- cUGCGCACcgccuucgacgacagCGUGGACcccgaggUGCGCGagaUCCc -3'
miRNA:   3'- -ACGCGUGaa-------------GUACCUG-------AUGCGCg--AGG- -5'
25562 5' -53.8 NC_005337.1 + 102835 0.67 0.928724
Target:  5'- aGaCGCGCgUCAUGGuCgggcCGCGCgCCa -3'
miRNA:   3'- aC-GCGUGaAGUACCuGau--GCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 132095 0.67 0.928724
Target:  5'- aGCGCG--UCGUGGACacgcugguCGCGCUg- -3'
miRNA:   3'- aCGCGUgaAGUACCUGau------GCGCGAgg -5'
25562 5' -53.8 NC_005337.1 + 100836 0.67 0.930852
Target:  5'- cGCGCAUgaacgugacuaagcUCGUGGA---CGCGCUCa -3'
miRNA:   3'- aCGCGUGa-------------AGUACCUgauGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 4081 0.67 0.911488
Target:  5'- -uCGCACUcCA-GGAUgagcuccGCGUGCUCCg -3'
miRNA:   3'- acGCGUGAaGUaCCUGa------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 120286 0.67 0.928724
Target:  5'- cGCGCAaguaCAUGGcCgGCaCGCUCCg -3'
miRNA:   3'- aCGCGUgaa-GUACCuGaUGcGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 38855 0.67 0.911488
Target:  5'- cUGUGCGCcaagcaCAUGGAC-GCGCGgUUCu -3'
miRNA:   3'- -ACGCGUGaa----GUACCUGaUGCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 93830 0.67 0.911488
Target:  5'- gGCGUcg-UCAaGGGCcgUGCGCUCCg -3'
miRNA:   3'- aCGCGugaAGUaCCUGauGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 56328 0.67 0.904605
Target:  5'- --aGCGCUUCGUGGugcucaaGCUGCccaCGCUCUu -3'
miRNA:   3'- acgCGUGAAGUACC-------UGAUGc--GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 66952 0.67 0.905243
Target:  5'- cGUGUACacCAUGaccugguccucGGCcACGCGCUCCa -3'
miRNA:   3'- aCGCGUGaaGUAC-----------CUGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 86325 0.67 0.905243
Target:  5'- cGCGCGCgaaCAUGG-CguucaGuCGCUCCa -3'
miRNA:   3'- aCGCGUGaa-GUACCuGaug--C-GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 37954 0.67 0.905243
Target:  5'- cGUGC-CUcgUCGUGGGgUACuGCGCggCCa -3'
miRNA:   3'- aCGCGuGA--AGUACCUgAUG-CGCGa-GG- -5'
25562 5' -53.8 NC_005337.1 + 69109 0.67 0.923229
Target:  5'- gGUGCACcUCGUcugcGGGCgagcCGCGgUCCa -3'
miRNA:   3'- aCGCGUGaAGUA----CCUGau--GCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 95815 0.67 0.925457
Target:  5'- cGCGCACcgCAUgaaggcguacgccucGGGCgugaugACGCGCcCCu -3'
miRNA:   3'- aCGCGUGaaGUA---------------CCUGa-----UGCGCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.