miRNA display CGI


Results 81 - 100 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 71580 0.67 0.905243
Target:  5'- aGaCGCugUcCAagcUGGGCUACGUGCUg- -3'
miRNA:   3'- aC-GCGugAaGU---ACCUGAUGCGCGAgg -5'
25562 5' -53.8 NC_005337.1 + 125802 0.67 0.928724
Target:  5'- uUGCGacucCUUCAagaccagGGcCUGCGUGUUCCg -3'
miRNA:   3'- -ACGCgu--GAAGUa------CCuGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 25502 0.68 0.885044
Target:  5'- --aGCACguacUCGUuGAUgACGCGCUCCa -3'
miRNA:   3'- acgCGUGa---AGUAcCUGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 23052 0.68 0.877834
Target:  5'- gGCGCcCUUCA-GGAUg--GCGCUCg -3'
miRNA:   3'- aCGCGuGAAGUaCCUGaugCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 42657 0.68 0.885044
Target:  5'- cGUGCGugUCuGUGGcGCgaacgACGCGCUCCu -3'
miRNA:   3'- aCGCGUgaAG-UACC-UGa----UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 98773 0.68 0.892017
Target:  5'- gGCaGCGC--CGUGGACcgguacaACGCGCUCUc -3'
miRNA:   3'- aCG-CGUGaaGUACCUGa------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 99220 0.68 0.892017
Target:  5'- cGCGCGC-----GGACUucgACGCGgUCCa -3'
miRNA:   3'- aCGCGUGaaguaCCUGA---UGCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 100888 0.68 0.870395
Target:  5'- aGC-UACUUCGcgGGGCg--GCGCUCCg -3'
miRNA:   3'- aCGcGUGAAGUa-CCUGaugCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 35274 0.68 0.870395
Target:  5'- cGCGCACcUCggGGG--GCG-GCUCCa -3'
miRNA:   3'- aCGCGUGaAGuaCCUgaUGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 124172 0.68 0.870395
Target:  5'- cGCGUgacCUUCGUGGACcucGCcCGCUUCg -3'
miRNA:   3'- aCGCGu--GAAGUACCUGa--UGcGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 24691 0.68 0.862731
Target:  5'- cUGCucagGCGCUUCAagcaccUGGGCUGCuacCGCUCg -3'
miRNA:   3'- -ACG----CGUGAAGU------ACCUGAUGc--GCGAGg -5'
25562 5' -53.8 NC_005337.1 + 129165 0.68 0.885044
Target:  5'- cGCGCACUgacgUCAU---CUACGCGCUg- -3'
miRNA:   3'- aCGCGUGA----AGUAccuGAUGCGCGAgg -5'
25562 5' -53.8 NC_005337.1 + 22677 0.68 0.885044
Target:  5'- aGCGCuucGCggaCAUGGACcugaacgGCGCGUUCa -3'
miRNA:   3'- aCGCG---UGaa-GUACCUGa------UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 60957 0.68 0.877834
Target:  5'- aUGCGCAUg----GGGC-GCGCGC-CCa -3'
miRNA:   3'- -ACGCGUGaaguaCCUGaUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 70329 0.68 0.877834
Target:  5'- cUGCGCAUcgUCAagggGGGCaACGCGCa-- -3'
miRNA:   3'- -ACGCGUGa-AGUa---CCUGaUGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 74647 0.68 0.875626
Target:  5'- gGCGcCGCUgcccggggagaccuUCGUGGACUgcgugACGCGCgaggUCg -3'
miRNA:   3'- aCGC-GUGA--------------AGUACCUGA-----UGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 100297 0.68 0.865823
Target:  5'- cGCGCA--UCcUGGGCUGCGUcccccgcgaguccucGCUCUa -3'
miRNA:   3'- aCGCGUgaAGuACCUGAUGCG---------------CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 101490 0.68 0.870395
Target:  5'- gGCGCuGCUcgcgcUCAUGcGCga-GCGCUCCg -3'
miRNA:   3'- aCGCG-UGA-----AGUACcUGaugCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 99398 0.68 0.869638
Target:  5'- gGCGCGCUcguagaguucacgUCGgaGGAUgGCGCGCcgCCg -3'
miRNA:   3'- aCGCGUGA-------------AGUa-CCUGaUGCGCGa-GG- -5'
25562 5' -53.8 NC_005337.1 + 29629 0.68 0.862731
Target:  5'- cGCGCccuucgcuGCUgaUCAcGGGCUccgagaugcGCGUGCUCCc -3'
miRNA:   3'- aCGCG--------UGA--AGUaCCUGA---------UGCGCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.