miRNA display CGI


Results 101 - 120 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 99220 0.68 0.892017
Target:  5'- cGCGCGC-----GGACUucgACGCGgUCCa -3'
miRNA:   3'- aCGCGUGaaguaCCUGA---UGCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 98773 0.68 0.892017
Target:  5'- gGCaGCGC--CGUGGACcgguacaACGCGCUCUc -3'
miRNA:   3'- aCG-CGUGaaGUACCUGa------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 42657 0.68 0.885044
Target:  5'- cGUGCGugUCuGUGGcGCgaacgACGCGCUCCu -3'
miRNA:   3'- aCGCGUgaAG-UACC-UGa----UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 25502 0.68 0.885044
Target:  5'- --aGCACguacUCGUuGAUgACGCGCUCCa -3'
miRNA:   3'- acgCGUGa---AGUAcCUGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 129165 0.68 0.885044
Target:  5'- cGCGCACUgacgUCAU---CUACGCGCUg- -3'
miRNA:   3'- aCGCGUGA----AGUAccuGAUGCGCGAgg -5'
25562 5' -53.8 NC_005337.1 + 22677 0.68 0.885044
Target:  5'- aGCGCuucGCggaCAUGGACcugaacgGCGCGUUCa -3'
miRNA:   3'- aCGCG---UGaa-GUACCUGa------UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 60957 0.68 0.877834
Target:  5'- aUGCGCAUg----GGGC-GCGCGC-CCa -3'
miRNA:   3'- -ACGCGUGaaguaCCUGaUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 70329 0.68 0.877834
Target:  5'- cUGCGCAUcgUCAagggGGGCaACGCGCa-- -3'
miRNA:   3'- -ACGCGUGa-AGUa---CCUGaUGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 74647 0.68 0.875626
Target:  5'- gGCGcCGCUgcccggggagaccuUCGUGGACUgcgugACGCGCgaggUCg -3'
miRNA:   3'- aCGC-GUGA--------------AGUACCUGA-----UGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 132205 0.68 0.870395
Target:  5'- aGCGCGC-UCGcGGAC-ACGCucgcCUCCa -3'
miRNA:   3'- aCGCGUGaAGUaCCUGaUGCGc---GAGG- -5'
25562 5' -53.8 NC_005337.1 + 98738 0.69 0.838455
Target:  5'- cGCGUGCUgaccgUCAUGGACUuccuCGCGaugCUg -3'
miRNA:   3'- aCGCGUGA-----AGUACCUGAu---GCGCga-GG- -5'
25562 5' -53.8 NC_005337.1 + 65852 0.69 0.846754
Target:  5'- aGCGgACUcgUCGUcgGGGC-GCGCGCUaCCa -3'
miRNA:   3'- aCGCgUGA--AGUA--CCUGaUGCGCGA-GG- -5'
25562 5' -53.8 NC_005337.1 + 57495 0.69 0.844285
Target:  5'- gGUGCGCcUCAaGGACUaccagcucuucgugGCGCGCgucuUCCu -3'
miRNA:   3'- aCGCGUGaAGUaCCUGA--------------UGCGCG----AGG- -5'
25562 5' -53.8 NC_005337.1 + 86959 0.69 0.838455
Target:  5'- cGCGCGCcUCGaacauGACcACGCGCUUCu -3'
miRNA:   3'- aCGCGUGaAGUac---CUGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 111194 0.69 0.838455
Target:  5'- cGCGCACgaugCcgGGcACggccgcCGCGUUCCg -3'
miRNA:   3'- aCGCGUGaa--GuaCC-UGau----GCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 105954 0.69 0.838455
Target:  5'- gGCuGCugUUCcUGGACgACGCGCg-- -3'
miRNA:   3'- aCG-CGugAAGuACCUGaUGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 35374 0.69 0.829958
Target:  5'- cGUGUACUcCccGGGCUcgaGCGCGCagUCCg -3'
miRNA:   3'- aCGCGUGAaGuaCCUGA---UGCGCG--AGG- -5'
25562 5' -53.8 NC_005337.1 + 38254 0.69 0.829958
Target:  5'- gGCGCGgaUCAUuucgcgacgGGAUaaaUAgGCGCUCCa -3'
miRNA:   3'- aCGCGUgaAGUA---------CCUG---AUgCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 99708 0.69 0.854848
Target:  5'- cUGCGCGCggccaucgUCGcGGACaggACGCuCUCCc -3'
miRNA:   3'- -ACGCGUGa-------AGUaCCUGa--UGCGcGAGG- -5'
25562 5' -53.8 NC_005337.1 + 66860 0.69 0.854848
Target:  5'- aGCGCaaguGCUggcCGUGGACUucggcaacgGCGCGgaCCu -3'
miRNA:   3'- aCGCG----UGAa--GUACCUGA---------UGCGCgaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.