Results 21 - 40 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25562 | 5' | -53.8 | NC_005337.1 | + | 127392 | 0.74 | 0.580391 |
Target: 5'- cGCGCGCgaCAUGGACggGCGCacGCUgCu -3' miRNA: 3'- aCGCGUGaaGUACCUGa-UGCG--CGAgG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 89877 | 0.74 | 0.559692 |
Target: 5'- cGCGCGCUggCgAUGGAgaGCGCGCUg- -3' miRNA: 3'- aCGCGUGAa-G-UACCUgaUGCGCGAgg -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 39455 | 0.74 | 0.559692 |
Target: 5'- gUGCGCACg--AUGGAgUACGaCGcCUCCg -3' miRNA: 3'- -ACGCGUGaagUACCUgAUGC-GC-GAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 58460 | 0.74 | 0.594976 |
Target: 5'- aGUGCACgagCGUGGGCUuuuucucggccuccaGC-CGCUCCa -3' miRNA: 3'- aCGCGUGaa-GUACCUGA---------------UGcGCGAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 58009 | 0.74 | 0.587675 |
Target: 5'- aGCGCGCUgaagaaggcgaccuUCggGGACggccgUGCGCUCCu -3' miRNA: 3'- aCGCGUGA--------------AGuaCCUGau---GCGCGAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 29820 | 0.74 | 0.580391 |
Target: 5'- cGCGUACUgUGUGuGCUGCGCguGCUCCa -3' miRNA: 3'- aCGCGUGAaGUACcUGAUGCG--CGAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 68403 | 0.74 | 0.559692 |
Target: 5'- cUGCGCGCgugCGUGGua-GCGCGCgCCg -3' miRNA: 3'- -ACGCGUGaa-GUACCugaUGCGCGaGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 38537 | 0.74 | 0.559692 |
Target: 5'- cGUGCACggCG-GGA--ACGCGCUCCg -3' miRNA: 3'- aCGCGUGaaGUaCCUgaUGCGCGAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 55218 | 0.74 | 0.549419 |
Target: 5'- gGCGCGCcgCAaGGACcagaccGCGCGUUCCg -3' miRNA: 3'- aCGCGUGaaGUaCCUGa-----UGCGCGAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 66909 | 0.73 | 0.632685 |
Target: 5'- gGCGCACgauguacucggUCAUGGGCUGCGCcaUCg -3' miRNA: 3'- aCGCGUGa----------AGUACCUGAUGCGcgAGg -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 86153 | 0.73 | 0.598109 |
Target: 5'- cGCGCAgUUgAUGGACcaggucuucacgaaGCGCUCCg -3' miRNA: 3'- aCGCGUgAAgUACCUGaug-----------CGCGAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 43494 | 0.73 | 0.601245 |
Target: 5'- gGCGUACUcgugCAUGGACgaggACGaguuccgcaGCUCCg -3' miRNA: 3'- aCGCGUGAa---GUACCUGa---UGCg--------CGAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 97074 | 0.73 | 0.601245 |
Target: 5'- gGCGCGCg--GUGGuCUGCGUGC-CCa -3' miRNA: 3'- aCGCGUGaagUACCuGAUGCGCGaGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 52115 | 0.73 | 0.615903 |
Target: 5'- gUGCGCgacgggccggccaugGcCUUCGUGGACgcgugucGCGCGCUCa -3' miRNA: 3'- -ACGCG---------------U-GAAGUACCUGa------UGCGCGAGg -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 1209 | 0.73 | 0.643176 |
Target: 5'- cGCGCAUUUC---GACcACGCGCUCUc -3' miRNA: 3'- aCGCGUGAAGuacCUGaUGCGCGAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 58361 | 0.73 | 0.611711 |
Target: 5'- cGCGCuCUUCGcGGACUucGCGCGCa-- -3' miRNA: 3'- aCGCGuGAAGUaCCUGA--UGCGCGagg -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 80147 | 0.73 | 0.653657 |
Target: 5'- aUGCGCGCggCGcGGccguCGCGCUCCa -3' miRNA: 3'- -ACGCGUGaaGUaCCugauGCGCGAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 128791 | 0.73 | 0.611711 |
Target: 5'- gUGCGCGCgaUCAUGGGCgggugcgGCuGCGC-CCu -3' miRNA: 3'- -ACGCGUGa-AGUACCUGa------UG-CGCGaGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 105226 | 0.73 | 0.618 |
Target: 5'- cUGCGCGCUcgcgggcgcccggcUCAUGGACgagGCccgccucgucgagGCGCUCg -3' miRNA: 3'- -ACGCGUGA--------------AGUACCUGa--UG-------------CGCGAGg -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 63402 | 0.73 | 0.601245 |
Target: 5'- aGCGCGC----UGGACaugGCGCGCUCg -3' miRNA: 3'- aCGCGUGaaguACCUGa--UGCGCGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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