miRNA display CGI


Results 61 - 80 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 65737 0.71 0.725999
Target:  5'- aGCGCugUUCAUGGc---CG-GCUCCg -3'
miRNA:   3'- aCGCGugAAGUACCugauGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 43575 0.7 0.784813
Target:  5'- cGCGCGCUgaaggaggugcUgAUGGcCUACGCGgguaUCCg -3'
miRNA:   3'- aCGCGUGA-----------AgUACCuGAUGCGCg---AGG- -5'
25562 5' -53.8 NC_005337.1 + 71406 0.7 0.784813
Target:  5'- aGCGCaacuACUUCc---GCUACGCGUUCCu -3'
miRNA:   3'- aCGCG----UGAAGuaccUGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 5490 0.7 0.775314
Target:  5'- gUGCGCACgccCGUGGACccgaauccgccUGCGC-CUCUu -3'
miRNA:   3'- -ACGCGUGaa-GUACCUG-----------AUGCGcGAGG- -5'
25562 5' -53.8 NC_005337.1 + 74039 0.7 0.784813
Target:  5'- -aCGU-CUUCGUGGACUGCGgGgaCCu -3'
miRNA:   3'- acGCGuGAAGUACCUGAUGCgCgaGG- -5'
25562 5' -53.8 NC_005337.1 + 99471 0.7 0.793239
Target:  5'- gUGCGCGagggcguCUUCGUGGccgugcggcGCUACGCGgaCUg -3'
miRNA:   3'- -ACGCGU-------GAAGUACC---------UGAUGCGCgaGG- -5'
25562 5' -53.8 NC_005337.1 + 70875 0.7 0.794168
Target:  5'- aGCGCGC--CAUGucCaGCGCGCUCUg -3'
miRNA:   3'- aCGCGUGaaGUACcuGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 55360 0.7 0.794168
Target:  5'- cGCGCGCUcuUCGaGGA----GCGCUCCg -3'
miRNA:   3'- aCGCGUGA--AGUaCCUgaugCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 92952 0.7 0.808812
Target:  5'- aGCGUGCUggugcgCGUGGACgccacgcuggacaACGCGCUggCCg -3'
miRNA:   3'- aCGCGUGAa-----GUACCUGa------------UGCGCGA--GG- -5'
25562 5' -53.8 NC_005337.1 + 70611 0.7 0.799707
Target:  5'- cGCGaCAUgcUCGUGGACgucuccgagacggACGUGCUCUa -3'
miRNA:   3'- aCGC-GUGa-AGUACCUGa------------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 5523 0.7 0.794168
Target:  5'- cGCGCGCcggc-GGAgCUcugucACGCGCUCCa -3'
miRNA:   3'- aCGCGUGaaguaCCU-GA-----UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 109468 0.7 0.812406
Target:  5'- gUGCGUGCgcgCGUGG---GCGCGCUuCCg -3'
miRNA:   3'- -ACGCGUGaa-GUACCugaUGCGCGA-GG- -5'
25562 5' -53.8 NC_005337.1 + 101027 0.7 0.803369
Target:  5'- gGCGUggACUcgCGUGGGCccguuucUGCGCUCCg -3'
miRNA:   3'- aCGCG--UGAa-GUACCUGau-----GCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 23472 0.7 0.803369
Target:  5'- cGUGUccgACUccgaCGUGGAgaACGUGCUCCg -3'
miRNA:   3'- aCGCG---UGAa---GUACCUgaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 78102 0.69 0.846754
Target:  5'- cGCGCGCUgaggucCA-GGACUACgGCGUcggCCu -3'
miRNA:   3'- aCGCGUGAa-----GUaCCUGAUG-CGCGa--GG- -5'
25562 5' -53.8 NC_005337.1 + 89680 0.69 0.854848
Target:  5'- aGCGCGa-UCAUguccauguacagGGACUugGacaGCUCCa -3'
miRNA:   3'- aCGCGUgaAGUA------------CCUGAugCg--CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 47995 0.69 0.854848
Target:  5'- gGcCGCACUgCGUGGcCUggauccGCGCGCUgCg -3'
miRNA:   3'- aC-GCGUGAaGUACCuGA------UGCGCGAgG- -5'
25562 5' -53.8 NC_005337.1 + 66860 0.69 0.854848
Target:  5'- aGCGCaaguGCUggcCGUGGACUucggcaacgGCGCGgaCCu -3'
miRNA:   3'- aCGCG----UGAa--GUACCUGA---------UGCGCgaGG- -5'
25562 5' -53.8 NC_005337.1 + 99708 0.69 0.854848
Target:  5'- cUGCGCGCggccaucgUCGcGGACaggACGCuCUCCc -3'
miRNA:   3'- -ACGCGUGa-------AGUaCCUGa--UGCGcGAGG- -5'
25562 5' -53.8 NC_005337.1 + 13830 0.69 0.821273
Target:  5'- aGCGCGCcccgCAgGGACUcgggggGCGUgaGCUCCg -3'
miRNA:   3'- aCGCGUGaa--GUaCCUGA------UGCG--CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.