miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 38537 0.74 0.559692
Target:  5'- cGUGCACggCG-GGA--ACGCGCUCCg -3'
miRNA:   3'- aCGCGUGaaGUaCCUgaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 68403 0.74 0.559692
Target:  5'- cUGCGCGCgugCGUGGua-GCGCGCgCCg -3'
miRNA:   3'- -ACGCGUGaa-GUACCugaUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 39455 0.74 0.559692
Target:  5'- gUGCGCACg--AUGGAgUACGaCGcCUCCg -3'
miRNA:   3'- -ACGCGUGaagUACCUgAUGC-GC-GAGG- -5'
25562 5' -53.8 NC_005337.1 + 127462 0.74 0.559692
Target:  5'- aUGCGCACgcUCGUGGACaGCG-GCUgCg -3'
miRNA:   3'- -ACGCGUGa-AGUACCUGaUGCgCGAgG- -5'
25562 5' -53.8 NC_005337.1 + 29820 0.74 0.580391
Target:  5'- cGCGUACUgUGUGuGCUGCGCguGCUCCa -3'
miRNA:   3'- aCGCGUGAaGUACcUGAUGCG--CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 127392 0.74 0.580391
Target:  5'- cGCGCGCgaCAUGGACggGCGCacGCUgCu -3'
miRNA:   3'- aCGCGUGaaGUACCUGa-UGCG--CGAgG- -5'
25562 5' -53.8 NC_005337.1 + 93062 0.74 0.586633
Target:  5'- gGUGCucucCUUCGUGGACgagacggacuacgACGgGCUCCu -3'
miRNA:   3'- aCGCGu---GAAGUACCUGa------------UGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 58009 0.74 0.587675
Target:  5'- aGCGCGCUgaagaaggcgaccuUCggGGACggccgUGCGCUCCu -3'
miRNA:   3'- aCGCGUGA--------------AGuaCCUGau---GCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 58460 0.74 0.594976
Target:  5'- aGUGCACgagCGUGGGCUuuuucucggccuccaGC-CGCUCCa -3'
miRNA:   3'- aCGCGUGaa-GUACCUGA---------------UGcGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 86153 0.73 0.598109
Target:  5'- cGCGCAgUUgAUGGACcaggucuucacgaaGCGCUCCg -3'
miRNA:   3'- aCGCGUgAAgUACCUGaug-----------CGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 63402 0.73 0.601245
Target:  5'- aGCGCGC----UGGACaugGCGCGCUCg -3'
miRNA:   3'- aCGCGUGaaguACCUGa--UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 43494 0.73 0.601245
Target:  5'- gGCGUACUcgugCAUGGACgaggACGaguuccgcaGCUCCg -3'
miRNA:   3'- aCGCGUGAa---GUACCUGa---UGCg--------CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 97074 0.73 0.601245
Target:  5'- gGCGCGCg--GUGGuCUGCGUGC-CCa -3'
miRNA:   3'- aCGCGUGaagUACCuGAUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 58361 0.73 0.611711
Target:  5'- cGCGCuCUUCGcGGACUucGCGCGCa-- -3'
miRNA:   3'- aCGCGuGAAGUaCCUGA--UGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 128791 0.73 0.611711
Target:  5'- gUGCGCGCgaUCAUGGGCgggugcgGCuGCGC-CCu -3'
miRNA:   3'- -ACGCGUGa-AGUACCUGa------UG-CGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 52115 0.73 0.615903
Target:  5'- gUGCGCgacgggccggccaugGcCUUCGUGGACgcgugucGCGCGCUCa -3'
miRNA:   3'- -ACGCG---------------U-GAAGUACCUGa------UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 105226 0.73 0.618
Target:  5'- cUGCGCGCUcgcgggcgcccggcUCAUGGACgagGCccgccucgucgagGCGCUCg -3'
miRNA:   3'- -ACGCGUGA--------------AGUACCUGa--UG-------------CGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 66909 0.73 0.632685
Target:  5'- gGCGCACgauguacucggUCAUGGGCUGCGCcaUCg -3'
miRNA:   3'- aCGCGUGa----------AGUACCUGAUGCGcgAGg -5'
25562 5' -53.8 NC_005337.1 + 1209 0.73 0.643176
Target:  5'- cGCGCAUUUC---GACcACGCGCUCUc -3'
miRNA:   3'- aCGCGUGAAGuacCUGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 58651 0.73 0.643176
Target:  5'- cGCGCACgcg--GGAC-ACGCGCgCCa -3'
miRNA:   3'- aCGCGUGaaguaCCUGaUGCGCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.