miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 58651 0.73 0.643176
Target:  5'- cGCGCACgcg--GGAC-ACGCGCgCCa -3'
miRNA:   3'- aCGCGUGaaguaCCUGaUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 80147 0.73 0.653657
Target:  5'- aUGCGCGCggCGcGGccguCGCGCUCCa -3'
miRNA:   3'- -ACGCGUGaaGUaCCugauGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 25447 0.72 0.66412
Target:  5'- cGCGCGCUUCggcaccGUGGAC-GCGUGCg-- -3'
miRNA:   3'- aCGCGUGAAG------UACCUGaUGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 16055 0.72 0.66412
Target:  5'- cGCGCACUgCAUGauGACgucggGCG-GCUCCg -3'
miRNA:   3'- aCGCGUGAaGUAC--CUGa----UGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 42537 0.72 0.674556
Target:  5'- cGCGCGCguggcCggGGGCUACGUGCgcuaCCc -3'
miRNA:   3'- aCGCGUGaa---GuaCCUGAUGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 52814 0.72 0.674556
Target:  5'- gGCGgACcugCugcGcGACUACGCGCUCCa -3'
miRNA:   3'- aCGCgUGaa-Gua-C-CUGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 100100 0.72 0.674556
Target:  5'- gGCGCGCcgCGUGGAgCUGCGCa-UCCc -3'
miRNA:   3'- aCGCGUGaaGUACCU-GAUGCGcgAGG- -5'
25562 5' -53.8 NC_005337.1 + 103165 0.72 0.69531
Target:  5'- cGCGguCacCGUGGAgaACGCGCUCg -3'
miRNA:   3'- aCGCguGaaGUACCUgaUGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 47332 0.72 0.70971
Target:  5'- gGCGCGCguggUCAUGGACgccgACGacaacaucaucggcaUGCUCUu -3'
miRNA:   3'- aCGCGUGa---AGUACCUGa---UGC---------------GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 122778 0.71 0.714821
Target:  5'- gGcCGCGgaUCAUGGacgcguuGCUGCGCGCggCCa -3'
miRNA:   3'- aC-GCGUgaAGUACC-------UGAUGCGCGa-GG- -5'
25562 5' -53.8 NC_005337.1 + 94601 0.71 0.715841
Target:  5'- aGCGCACguacgugcCcgGGGCcACGCGCcCCa -3'
miRNA:   3'- aCGCGUGaa------GuaCCUGaUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 45219 0.71 0.719914
Target:  5'- cGCGCcCgcgUCAUGGuggucagcagcgcgcGCaUGCGCGUUCCg -3'
miRNA:   3'- aCGCGuGa--AGUACC---------------UG-AUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 130162 0.71 0.725999
Target:  5'- cGCGCGCUUUcgGaGGCcgUGCGCGCg-- -3'
miRNA:   3'- aCGCGUGAAGuaC-CUG--AUGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 65737 0.71 0.725999
Target:  5'- aGCGCugUUCAUGGc---CG-GCUCCg -3'
miRNA:   3'- aCGCGugAAGUACCugauGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 99585 0.71 0.725999
Target:  5'- gUGCgGCGCUUCGggcgGGACUGCGcCGUg-- -3'
miRNA:   3'- -ACG-CGUGAAGUa---CCUGAUGC-GCGagg -5'
25562 5' -53.8 NC_005337.1 + 47778 0.71 0.736072
Target:  5'- cGCGUACUUCGaGGGCgGgGUGCUgCg -3'
miRNA:   3'- aCGCGUGAAGUaCCUGaUgCGCGAgG- -5'
25562 5' -53.8 NC_005337.1 + 81542 0.71 0.736072
Target:  5'- cGCGCGCUUCAgcucGGC-GCGCaGCUCg -3'
miRNA:   3'- aCGCGUGAAGUac--CUGaUGCG-CGAGg -5'
25562 5' -53.8 NC_005337.1 + 112869 0.71 0.74605
Target:  5'- cGCGCGCUUCAUG----ACGuCGCUCa -3'
miRNA:   3'- aCGCGUGAAGUACcugaUGC-GCGAGg -5'
25562 5' -53.8 NC_005337.1 + 55515 0.71 0.755923
Target:  5'- cGUGCGCUUCG-GGAacgAgGUGCUCUa -3'
miRNA:   3'- aCGCGUGAAGUaCCUga-UgCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 129200 0.71 0.755923
Target:  5'- gGUGC-CUUCGUGGACgccccagaGCGCUgCu -3'
miRNA:   3'- aCGCGuGAAGUACCUGaug-----CGCGAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.