miRNA display CGI


Results 81 - 100 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 38254 0.69 0.829958
Target:  5'- gGCGCGgaUCAUuucgcgacgGGAUaaaUAgGCGCUCCa -3'
miRNA:   3'- aCGCGUgaAGUA---------CCUG---AUgCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 98738 0.69 0.838455
Target:  5'- cGCGUGCUgaccgUCAUGGACUuccuCGCGaugCUg -3'
miRNA:   3'- aCGCGUGA-----AGUACCUGAu---GCGCga-GG- -5'
25562 5' -53.8 NC_005337.1 + 105954 0.69 0.838455
Target:  5'- gGCuGCugUUCcUGGACgACGCGCg-- -3'
miRNA:   3'- aCG-CGugAAGuACCUGaUGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 111194 0.69 0.838455
Target:  5'- cGCGCACgaugCcgGGcACggccgcCGCGUUCCg -3'
miRNA:   3'- aCGCGUGaa--GuaCC-UGau----GCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 86959 0.69 0.838455
Target:  5'- cGCGCGCcUCGaacauGACcACGCGCUUCu -3'
miRNA:   3'- aCGCGUGaAGUac---CUGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 57495 0.69 0.844285
Target:  5'- gGUGCGCcUCAaGGACUaccagcucuucgugGCGCGCgucuUCCu -3'
miRNA:   3'- aCGCGUGaAGUaCCUGA--------------UGCGCG----AGG- -5'
25562 5' -53.8 NC_005337.1 + 65852 0.69 0.846754
Target:  5'- aGCGgACUcgUCGUcgGGGC-GCGCGCUaCCa -3'
miRNA:   3'- aCGCgUGA--AGUA--CCUGaUGCGCGA-GG- -5'
25562 5' -53.8 NC_005337.1 + 105435 0.69 0.846754
Target:  5'- gGCGUACUgccgCAUGGuCUcgAUgugGUGCUCCa -3'
miRNA:   3'- aCGCGUGAa---GUACCuGA--UG---CGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 18794 0.69 0.846754
Target:  5'- gGCGCACcUCGugguUGGGCUucagGCGCauguCUCCg -3'
miRNA:   3'- aCGCGUGaAGU----ACCUGA----UGCGc---GAGG- -5'
25562 5' -53.8 NC_005337.1 + 78102 0.69 0.846754
Target:  5'- cGCGCGCUgaggucCA-GGACUACgGCGUcggCCu -3'
miRNA:   3'- aCGCGUGAa-----GUaCCUGAUG-CGCGa--GG- -5'
25562 5' -53.8 NC_005337.1 + 133103 0.69 0.846754
Target:  5'- cGCGCACcgCcuagcGGGCcgcuccgccgGCGCGCUCCc -3'
miRNA:   3'- aCGCGUGaaGua---CCUGa---------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 53662 0.69 0.850016
Target:  5'- cGCGCGCUUCGcggcgugcucgcUGGACccuugaagcgccggGCGCG-UCCu -3'
miRNA:   3'- aCGCGUGAAGU------------ACCUGa-------------UGCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 47995 0.69 0.854848
Target:  5'- gGcCGCACUgCGUGGcCUggauccGCGCGCUgCg -3'
miRNA:   3'- aC-GCGUGAaGUACCuGA------UGCGCGAgG- -5'
25562 5' -53.8 NC_005337.1 + 89680 0.69 0.854848
Target:  5'- aGCGCGa-UCAUguccauguacagGGACUugGacaGCUCCa -3'
miRNA:   3'- aCGCGUgaAGUA------------CCUGAugCg--CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 66860 0.69 0.854848
Target:  5'- aGCGCaaguGCUggcCGUGGACUucggcaacgGCGCGgaCCu -3'
miRNA:   3'- aCGCG----UGAa--GUACCUGA---------UGCGCgaGG- -5'
25562 5' -53.8 NC_005337.1 + 99708 0.69 0.854848
Target:  5'- cUGCGCGCggccaucgUCGcGGACaggACGCuCUCCc -3'
miRNA:   3'- -ACGCGUGa-------AGUaCCUGa--UGCGcGAGG- -5'
25562 5' -53.8 NC_005337.1 + 102868 0.69 0.854848
Target:  5'- aGUGCAUguucgUCAUGGACaugAUGCGC-Cg -3'
miRNA:   3'- aCGCGUGa----AGUACCUGa--UGCGCGaGg -5'
25562 5' -53.8 NC_005337.1 + 58037 0.69 0.854848
Target:  5'- cGCGCuCUUCGacGGCgGCGUGCUCg -3'
miRNA:   3'- aCGCGuGAAGUacCUGaUGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 24691 0.68 0.862731
Target:  5'- cUGCucagGCGCUUCAagcaccUGGGCUGCuacCGCUCg -3'
miRNA:   3'- -ACG----CGUGAAGU------ACCUGAUGc--GCGAGg -5'
25562 5' -53.8 NC_005337.1 + 29629 0.68 0.862731
Target:  5'- cGCGCccuucgcuGCUgaUCAcGGGCUccgagaugcGCGUGCUCCc -3'
miRNA:   3'- aCGCG--------UGA--AGUaCCUGA---------UGCGCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.