miRNA display CGI


Results 21 - 40 of 208 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 117298 0.66 0.943704
Target:  5'- cGCGUGCUggagGUGGACgccuccgcgcACGCGUUCg -3'
miRNA:   3'- aCGCGUGAag--UACCUGa---------UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 102585 0.66 0.943704
Target:  5'- gUGCGCAag--AUGGucuACUGCGUGUUCUu -3'
miRNA:   3'- -ACGCGUgaagUACC---UGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 66317 0.66 0.943704
Target:  5'- aGCGcCGCggUCGcGGGCUggcgacACGUGCUCg -3'
miRNA:   3'- aCGC-GUGa-AGUaCCUGA------UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 48686 0.66 0.943704
Target:  5'- cGCGCAgaUCcgGGGCgccaACG-GCUCg -3'
miRNA:   3'- aCGCGUgaAGuaCCUGa---UGCgCGAGg -5'
25562 5' -53.8 NC_005337.1 + 115992 0.66 0.943704
Target:  5'- cGUGCACaUCGcgcUGGGCgUGCG-GCUCa -3'
miRNA:   3'- aCGCGUGaAGU---ACCUG-AUGCgCGAGg -5'
25562 5' -53.8 NC_005337.1 + 95247 0.66 0.943704
Target:  5'- cGUGCAC-UCGUGcGCgcggcagACGCGCgggCCc -3'
miRNA:   3'- aCGCGUGaAGUACcUGa------UGCGCGa--GG- -5'
25562 5' -53.8 NC_005337.1 + 44368 0.66 0.941836
Target:  5'- cGUGCGCgacacguccaacaUCGUGaACaGCGCGCUCUc -3'
miRNA:   3'- aCGCGUGa------------AGUACcUGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 95000 0.66 0.93896
Target:  5'- cGCGUACUUgcgcgaCAgcggcGGcuGCUGCGCGUUCUu -3'
miRNA:   3'- aCGCGUGAA------GUa----CC--UGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 28264 0.66 0.93896
Target:  5'- cGCGCACgugCGUGGugUcCGUGaUCa -3'
miRNA:   3'- aCGCGUGaa-GUACCugAuGCGCgAGg -5'
25562 5' -53.8 NC_005337.1 + 3466 0.66 0.93896
Target:  5'- gGCgGCACUgggUCGUcGcGACUGCGCGUgCUg -3'
miRNA:   3'- aCG-CGUGA---AGUA-C-CUGAUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 125729 0.66 0.93896
Target:  5'- cUGCGCACgcUCGUaGaGGCggaGCGCGCgugaCCg -3'
miRNA:   3'- -ACGCGUGa-AGUA-C-CUGa--UGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 122388 0.66 0.93896
Target:  5'- cGUGCGCgaggUCGUGcugcgcGGCgGCGCGCggcgCCu -3'
miRNA:   3'- aCGCGUGa---AGUAC------CUGaUGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 66114 0.66 0.93896
Target:  5'- cUGCGCGCg-CGUGGAgUucaaguccaaGCGCGUggacggUCCg -3'
miRNA:   3'- -ACGCGUGaaGUACCUgA----------UGCGCG------AGG- -5'
25562 5' -53.8 NC_005337.1 + 126882 0.66 0.93896
Target:  5'- cUGCGUGC-UCGUGGcgaggaacgccaACUGCGCGgaCa -3'
miRNA:   3'- -ACGCGUGaAGUACC------------UGAUGCGCgaGg -5'
25562 5' -53.8 NC_005337.1 + 17030 0.66 0.93896
Target:  5'- cGCGCACUgCGUcgcguuccgcgcGGuCUGCaCGUUCCg -3'
miRNA:   3'- aCGCGUGAaGUA------------CCuGAUGcGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 38791 0.66 0.93896
Target:  5'- cGCGCcCgagugCAUGGACUGgcUGCGCa-- -3'
miRNA:   3'- aCGCGuGaa---GUACCUGAU--GCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 105623 0.66 0.93896
Target:  5'- gGCGUGCcgUUCugcaccgucGGGCU-CGUGCUCCg -3'
miRNA:   3'- aCGCGUG--AAGua-------CCUGAuGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 131614 0.66 0.935995
Target:  5'- cGCGCACUcagCGUGGAg-GCGgccggcgccaccuucCGCUUCg -3'
miRNA:   3'- aCGCGUGAa--GUACCUgaUGC---------------GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 24977 0.66 0.933968
Target:  5'- gGUGCGCUUCuucGGCUgcaACGCGCgcauggacagcuUCCa -3'
miRNA:   3'- aCGCGUGAAGuacCUGA---UGCGCG------------AGG- -5'
25562 5' -53.8 NC_005337.1 + 41672 0.66 0.933968
Target:  5'- cGCGCGCgaaCGcGGuCUgcACGgGCUCCc -3'
miRNA:   3'- aCGCGUGaa-GUaCCuGA--UGCgCGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.