miRNA display CGI


Results 41 - 60 of 208 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 114970 0.66 0.933968
Target:  5'- cGCGCuccgcCUaCGUGGGCgGCGauauaguccuaCGCUCCa -3'
miRNA:   3'- aCGCGu----GAaGUACCUGaUGC-----------GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 41672 0.66 0.933968
Target:  5'- cGCGCGCgaaCGcGGuCUgcACGgGCUCCc -3'
miRNA:   3'- aCGCGUGaa-GUaCCuGA--UGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 133372 0.66 0.933968
Target:  5'- cGcCGCGCUcgUCGcgcucGGGCUccugcucgGCGCGCUCUu -3'
miRNA:   3'- aC-GCGUGA--AGUa----CCUGA--------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 28532 0.66 0.933968
Target:  5'- gGCGCAC-UCGUccucggaguagaGGAUccggACGCGC-CCa -3'
miRNA:   3'- aCGCGUGaAGUA------------CCUGa---UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 133372 0.66 0.933968
Target:  5'- cGcCGCGCUcgUCGcgcucGGGCUccugcucgGCGCGCUCUu -3'
miRNA:   3'- aC-GCGUGA--AGUa----CCUGA--------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 13911 0.66 0.933968
Target:  5'- aGCGuCAUcgucgggUCGUGGGCggGCGCagccccgucguGCUCCa -3'
miRNA:   3'- aCGC-GUGa------AGUACCUGa-UGCG-----------CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 105074 0.66 0.933455
Target:  5'- cUGCGCAgcgccucCUUCGgcacGGGCgccgcCGCGuCUCCg -3'
miRNA:   3'- -ACGCGU-------GAAGUa---CCUGau---GCGC-GAGG- -5'
25562 5' -53.8 NC_005337.1 + 73398 0.66 0.931901
Target:  5'- gGCGCGCccgcacccgcagcUCGUGGACgugGUGCUCg -3'
miRNA:   3'- aCGCGUGa------------AGUACCUGaugCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 100836 0.67 0.930852
Target:  5'- cGCGCAUgaacgugacuaagcUCGUGGA---CGCGCUCa -3'
miRNA:   3'- aCGCGUGa-------------AGUACCUgauGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 132095 0.67 0.928724
Target:  5'- aGCGCG--UCGUGGACacgcugguCGCGCUg- -3'
miRNA:   3'- aCGCGUgaAGUACCUGau------GCGCGAgg -5'
25562 5' -53.8 NC_005337.1 + 102835 0.67 0.928724
Target:  5'- aGaCGCGCgUCAUGGuCgggcCGCGCgCCa -3'
miRNA:   3'- aC-GCGUGaAGUACCuGau--GCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 124794 0.67 0.928724
Target:  5'- cUGCGCGCag-AUGGGCcggcgguggACGCGCcgguUCCa -3'
miRNA:   3'- -ACGCGUGaagUACCUGa--------UGCGCG----AGG- -5'
25562 5' -53.8 NC_005337.1 + 125802 0.67 0.928724
Target:  5'- uUGCGacucCUUCAagaccagGGcCUGCGUGUUCCg -3'
miRNA:   3'- -ACGCgu--GAAGUa------CCuGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 120286 0.67 0.928724
Target:  5'- cGCGCAaguaCAUGGcCgGCaCGCUCCg -3'
miRNA:   3'- aCGCGUgaa-GUACCuGaUGcGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 97139 0.67 0.928186
Target:  5'- cUGCGCGugccCUUCGUcgucuccuacgacGGcgccucggcGCUGCuGCGCUCCg -3'
miRNA:   3'- -ACGCGU----GAAGUA-------------CC---------UGAUG-CGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 95815 0.67 0.925457
Target:  5'- cGCGCACcgCAUgaaggcguacgccucGGGCgugaugACGCGCcCCu -3'
miRNA:   3'- aCGCGUGaaGUA---------------CCUGa-----UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 89048 0.67 0.923229
Target:  5'- cGCGCGCUgcugaccacCAU-GACgcggGCGCGgUCCu -3'
miRNA:   3'- aCGCGUGAa--------GUAcCUGa---UGCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 69109 0.67 0.923229
Target:  5'- gGUGCACcUCGUcugcGGGCgagcCGCGgUCCa -3'
miRNA:   3'- aCGCGUGaAGUA----CCUGau--GCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 104561 0.67 0.923229
Target:  5'- cGCGCGCg-CGUGcGCgccuCGCGCgUCCg -3'
miRNA:   3'- aCGCGUGaaGUACcUGau--GCGCG-AGG- -5'
25562 5' -53.8 NC_005337.1 + 35779 0.67 0.923229
Target:  5'- gGCGCGugUCAUgacGGACgccgccgGCGCGCcCCu -3'
miRNA:   3'- aCGCGUgaAGUA---CCUGa------UGCGCGaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.