miRNA display CGI


Results 61 - 80 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 104561 0.67 0.923229
Target:  5'- cGCGCGCg-CGUGcGCgccuCGCGCgUCCg -3'
miRNA:   3'- aCGCGUGaaGUACcUGau--GCGCG-AGG- -5'
25562 5' -53.8 NC_005337.1 + 57481 0.67 0.917483
Target:  5'- cGCGCACcUCAcugaggugcuggUGGACaGCaucaucgaGCGCUUCg -3'
miRNA:   3'- aCGCGUGaAGU------------ACCUGaUG--------CGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 84511 0.67 0.917483
Target:  5'- --aGCACUUCGUGGACa---UGUUCCg -3'
miRNA:   3'- acgCGUGAAGUACCUGaugcGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 90409 0.67 0.917483
Target:  5'- cGCGCACgUUCGUGGccgugaccaugaACUGCaggaggucguGCGCggaggCCa -3'
miRNA:   3'- aCGCGUG-AAGUACC------------UGAUG----------CGCGa----GG- -5'
25562 5' -53.8 NC_005337.1 + 44279 0.67 0.917483
Target:  5'- cGCGCGCggCGacgaGGGCauuuacgGCGCcGCUCCc -3'
miRNA:   3'- aCGCGUGaaGUa---CCUGa------UGCG-CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 48855 0.67 0.917483
Target:  5'- --aGCAUcgUCAUGGACgagUGCGCGUcCCc -3'
miRNA:   3'- acgCGUGa-AGUACCUG---AUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 71910 0.67 0.915115
Target:  5'- cUGCGCACcgccuucgacgacagCGUGGACcccgaggUGCGCGagaUCCc -3'
miRNA:   3'- -ACGCGUGaa-------------GUACCUG-------AUGCGCg--AGG- -5'
25562 5' -53.8 NC_005337.1 + 38855 0.67 0.911488
Target:  5'- cUGUGCGCcaagcaCAUGGAC-GCGCGgUUCu -3'
miRNA:   3'- -ACGCGUGaa----GUACCUGaUGCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 89843 0.67 0.911488
Target:  5'- gGCGCGCUUCAcGGcCUcgaGCuGCUUCu -3'
miRNA:   3'- aCGCGUGAAGUaCCuGAug-CG-CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 93830 0.67 0.911488
Target:  5'- gGCGUcg-UCAaGGGCcgUGCGCUCCg -3'
miRNA:   3'- aCGCGugaAGUaCCUGauGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 4081 0.67 0.911488
Target:  5'- -uCGCACUcCA-GGAUgagcuccGCGUGCUCCg -3'
miRNA:   3'- acGCGUGAaGUaCCUGa------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 101241 0.67 0.911488
Target:  5'- cGCGCGCgugcUCGcgcUGGACgGCGCGgaCg -3'
miRNA:   3'- aCGCGUGa---AGU---ACCUGaUGCGCgaGg -5'
25562 5' -53.8 NC_005337.1 + 57602 0.67 0.911488
Target:  5'- cUGCuGCGCUUCGUGGAgcccgaGCaGCUCa -3'
miRNA:   3'- -ACG-CGUGAAGUACCUgaug--CG-CGAGg -5'
25562 5' -53.8 NC_005337.1 + 24544 0.67 0.905243
Target:  5'- cUGCGCACcgCc--GACUGCucgGCGUUCCg -3'
miRNA:   3'- -ACGCGUGaaGuacCUGAUG---CGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 71580 0.67 0.905243
Target:  5'- aGaCGCugUcCAagcUGGGCUACGUGCUg- -3'
miRNA:   3'- aC-GCGugAaGU---ACCUGAUGCGCGAgg -5'
25562 5' -53.8 NC_005337.1 + 47966 0.67 0.905243
Target:  5'- cGCGCGCga-GUGcGGCgcggACGCG-UCCa -3'
miRNA:   3'- aCGCGUGaagUAC-CUGa---UGCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 86325 0.67 0.905243
Target:  5'- cGCGCGCgaaCAUGG-CguucaGuCGCUCCa -3'
miRNA:   3'- aCGCGUGaa-GUACCuGaug--C-GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 37954 0.67 0.905243
Target:  5'- cGUGC-CUcgUCGUGGGgUACuGCGCggCCa -3'
miRNA:   3'- aCGCGuGA--AGUACCUgAUG-CGCGa-GG- -5'
25562 5' -53.8 NC_005337.1 + 66952 0.67 0.905243
Target:  5'- cGUGUACacCAUGaccugguccucGGCcACGCGCUCCa -3'
miRNA:   3'- aCGCGUGaaGUAC-----------CUGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 52781 0.67 0.905243
Target:  5'- cGCGaCGCgUCGUGGuACgcCGCGUacUCCg -3'
miRNA:   3'- aCGC-GUGaAGUACC-UGauGCGCG--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.