Results 81 - 100 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
25562 | 5' | -53.8 | NC_005337.1 | + | 56328 | 0.67 | 0.904605 |
Target: 5'- --aGCGCUUCGUGGugcucaaGCUGCccaCGCUCUu -3' miRNA: 3'- acgCGUGAAGUACC-------UGAUGc--GCGAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 46429 | 0.67 | 0.904605 |
Target: 5'- -aUGCACcggUCGUGGAugauguucgcgauCUGCGCGCggcgcgCCg -3' miRNA: 3'- acGCGUGa--AGUACCU-------------GAUGCGCGa-----GG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 39036 | 0.68 | 0.898752 |
Target: 5'- cGCGCACgagugCAcGGACcaguCGCGCgaCCg -3' miRNA: 3'- aCGCGUGaa---GUaCCUGau--GCGCGa-GG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 98773 | 0.68 | 0.892017 |
Target: 5'- gGCaGCGC--CGUGGACcgguacaACGCGCUCUc -3' miRNA: 3'- aCG-CGUGaaGUACCUGa------UGCGCGAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 99220 | 0.68 | 0.892017 |
Target: 5'- cGCGCGC-----GGACUucgACGCGgUCCa -3' miRNA: 3'- aCGCGUGaaguaCCUGA---UGCGCgAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 23261 | 0.68 | 0.892017 |
Target: 5'- aGCGCAagaUCGaGcGCUACGCGCagUCCa -3' miRNA: 3'- aCGCGUga-AGUaCcUGAUGCGCG--AGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 124542 | 0.68 | 0.885044 |
Target: 5'- cGCGCuGCUUCA-GGcucuccuccccGCUGCGCGaggCCg -3' miRNA: 3'- aCGCG-UGAAGUaCC-----------UGAUGCGCga-GG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 55170 | 0.68 | 0.885044 |
Target: 5'- cGUGCGCgUCgacgacgugccgGUGGGCaUGCGCGUguUCCu -3' miRNA: 3'- aCGCGUGaAG------------UACCUG-AUGCGCG--AGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 5972 | 0.68 | 0.885044 |
Target: 5'- cGCGCGCgagCAgacGGGCcagGCGCGCg-- -3' miRNA: 3'- aCGCGUGaa-GUa--CCUGa--UGCGCGagg -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 22677 | 0.68 | 0.885044 |
Target: 5'- aGCGCuucGCggaCAUGGACcugaacgGCGCGUUCa -3' miRNA: 3'- aCGCG---UGaa-GUACCUGa------UGCGCGAGg -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 129165 | 0.68 | 0.885044 |
Target: 5'- cGCGCACUgacgUCAU---CUACGCGCUg- -3' miRNA: 3'- aCGCGUGA----AGUAccuGAUGCGCGAgg -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 25502 | 0.68 | 0.885044 |
Target: 5'- --aGCACguacUCGUuGAUgACGCGCUCCa -3' miRNA: 3'- acgCGUGa---AGUAcCUGaUGCGCGAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 42657 | 0.68 | 0.885044 |
Target: 5'- cGUGCGugUCuGUGGcGCgaacgACGCGCUCCu -3' miRNA: 3'- aCGCGUgaAG-UACC-UGa----UGCGCGAGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 35854 | 0.68 | 0.877834 |
Target: 5'- cGUGCGCUgCggGGGCggACGCGCg-- -3' miRNA: 3'- aCGCGUGAaGuaCCUGa-UGCGCGagg -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 70329 | 0.68 | 0.877834 |
Target: 5'- cUGCGCAUcgUCAagggGGGCaACGCGCa-- -3' miRNA: 3'- -ACGCGUGa-AGUa---CCUGaUGCGCGagg -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 23052 | 0.68 | 0.877834 |
Target: 5'- gGCGCcCUUCA-GGAUg--GCGCUCg -3' miRNA: 3'- aCGCGuGAAGUaCCUGaugCGCGAGg -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 60957 | 0.68 | 0.877834 |
Target: 5'- aUGCGCAUg----GGGC-GCGCGC-CCa -3' miRNA: 3'- -ACGCGUGaaguaCCUGaUGCGCGaGG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 74647 | 0.68 | 0.875626 |
Target: 5'- gGCGcCGCUgcccggggagaccuUCGUGGACUgcgugACGCGCgaggUCg -3' miRNA: 3'- aCGC-GUGA--------------AGUACCUGA-----UGCGCGa---GG- -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 124324 | 0.68 | 0.870395 |
Target: 5'- gGCGCAggcgcUCAUGGACgcgGCGCGaUCg -3' miRNA: 3'- aCGCGUga---AGUACCUGa--UGCGCgAGg -5' |
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25562 | 5' | -53.8 | NC_005337.1 | + | 132205 | 0.68 | 0.870395 |
Target: 5'- aGCGCGC-UCGcGGAC-ACGCucgcCUCCa -3' miRNA: 3'- aCGCGUGaAGUaCCUGaUGCGc---GAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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