miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 38791 0.66 0.93896
Target:  5'- cGCGCcCgagugCAUGGACUGgcUGCGCa-- -3'
miRNA:   3'- aCGCGuGaa---GUACCUGAU--GCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 38855 0.67 0.911488
Target:  5'- cUGUGCGCcaagcaCAUGGAC-GCGCGgUUCu -3'
miRNA:   3'- -ACGCGUGaa----GUACCUGaUGCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 38905 0.65 0.955285
Target:  5'- cGCGCGgccgucgcuguugcCUUCGgcGACUcgGCGCUCCg -3'
miRNA:   3'- aCGCGU--------------GAAGUacCUGAugCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 39036 0.68 0.898752
Target:  5'- cGCGCACgagugCAcGGACcaguCGCGCgaCCg -3'
miRNA:   3'- aCGCGUGaa---GUaCCUGau--GCGCGa-GG- -5'
25562 5' -53.8 NC_005337.1 + 39455 0.74 0.559692
Target:  5'- gUGCGCACg--AUGGAgUACGaCGcCUCCg -3'
miRNA:   3'- -ACGCGUGaagUACCUgAUGC-GC-GAGG- -5'
25562 5' -53.8 NC_005337.1 + 41672 0.66 0.933968
Target:  5'- cGCGCGCgaaCGcGGuCUgcACGgGCUCCc -3'
miRNA:   3'- aCGCGUGaa-GUaCCuGA--UGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 42537 0.72 0.674556
Target:  5'- cGCGCGCguggcCggGGGCUACGUGCgcuaCCc -3'
miRNA:   3'- aCGCGUGaa---GuaCCUGAUGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 42657 0.68 0.885044
Target:  5'- cGUGCGugUCuGUGGcGCgaacgACGCGCUCCu -3'
miRNA:   3'- aCGCGUgaAG-UACC-UGa----UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 43494 0.73 0.601245
Target:  5'- gGCGUACUcgugCAUGGACgaggACGaguuccgcaGCUCCg -3'
miRNA:   3'- aCGCGUGAa---GUACCUGa---UGCg--------CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 43575 0.7 0.784813
Target:  5'- cGCGCGCUgaaggaggugcUgAUGGcCUACGCGgguaUCCg -3'
miRNA:   3'- aCGCGUGA-----------AgUACCuGAUGCGCg---AGG- -5'
25562 5' -53.8 NC_005337.1 + 44279 0.67 0.917483
Target:  5'- cGCGCGCggCGacgaGGGCauuuacgGCGCcGCUCCc -3'
miRNA:   3'- aCGCGUGaaGUa---CCUGa------UGCG-CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 44368 0.66 0.941836
Target:  5'- cGUGCGCgacacguccaacaUCGUGaACaGCGCGCUCUc -3'
miRNA:   3'- aCGCGUGa------------AGUACcUGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 45219 0.71 0.719914
Target:  5'- cGCGCcCgcgUCAUGGuggucagcagcgcgcGCaUGCGCGUUCCg -3'
miRNA:   3'- aCGCGuGa--AGUACC---------------UG-AUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 46429 0.67 0.904605
Target:  5'- -aUGCACcggUCGUGGAugauguucgcgauCUGCGCGCggcgcgCCg -3'
miRNA:   3'- acGCGUGa--AGUACCU-------------GAUGCGCGa-----GG- -5'
25562 5' -53.8 NC_005337.1 + 47332 0.72 0.70971
Target:  5'- gGCGCGCguggUCAUGGACgccgACGacaacaucaucggcaUGCUCUu -3'
miRNA:   3'- aCGCGUGa---AGUACCUGa---UGC---------------GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 47591 0.69 0.829958
Target:  5'- aGC-CGCUgggCGUGGGCgacgccGCGCGCgcggCCg -3'
miRNA:   3'- aCGcGUGAa--GUACCUGa-----UGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 47778 0.71 0.736072
Target:  5'- cGCGUACUUCGaGGGCgGgGUGCUgCg -3'
miRNA:   3'- aCGCGUGAAGUaCCUGaUgCGCGAgG- -5'
25562 5' -53.8 NC_005337.1 + 47966 0.67 0.905243
Target:  5'- cGCGCGCga-GUGcGGCgcggACGCG-UCCa -3'
miRNA:   3'- aCGCGUGaagUAC-CUGa---UGCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 47972 0.78 0.387936
Target:  5'- --gGCuuCUUCGUGGACgggGCGCGCUUCg -3'
miRNA:   3'- acgCGu-GAAGUACCUGa--UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 47995 0.69 0.854848
Target:  5'- gGcCGCACUgCGUGGcCUggauccGCGCGCUgCg -3'
miRNA:   3'- aC-GCGUGAaGUACCuGA------UGCGCGAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.