miRNA display CGI


Results 61 - 80 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 48686 0.66 0.943704
Target:  5'- cGCGCAgaUCcgGGGCgccaACG-GCUCg -3'
miRNA:   3'- aCGCGUgaAGuaCCUGa---UGCgCGAGg -5'
25562 5' -53.8 NC_005337.1 + 48719 0.69 0.829958
Target:  5'- gGCGUACgugCcgGGGCUucucaccgcCGCGCUCa -3'
miRNA:   3'- aCGCGUGaa-GuaCCUGAu--------GCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 48855 0.67 0.917483
Target:  5'- --aGCAUcgUCAUGGACgagUGCGCGUcCCc -3'
miRNA:   3'- acgCGUGa-AGUACCUG---AUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 50664 0.74 0.549419
Target:  5'- aGCGCugUggaucgCGUGGAUaACGCcaGCUCCu -3'
miRNA:   3'- aCGCGugAa-----GUACCUGaUGCG--CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 52027 0.66 0.943704
Target:  5'- cGCGCGCgcggUCAUGGAguuccgggacCUGCGggaGCUg- -3'
miRNA:   3'- aCGCGUGa---AGUACCU----------GAUGCg--CGAgg -5'
25562 5' -53.8 NC_005337.1 + 52115 0.73 0.615903
Target:  5'- gUGCGCgacgggccggccaugGcCUUCGUGGACgcgugucGCGCGCUCa -3'
miRNA:   3'- -ACGCG---------------U-GAAGUACCUGa------UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 52781 0.67 0.905243
Target:  5'- cGCGaCGCgUCGUGGuACgcCGCGUacUCCg -3'
miRNA:   3'- aCGC-GUGaAGUACC-UGauGCGCG--AGG- -5'
25562 5' -53.8 NC_005337.1 + 52814 0.72 0.674556
Target:  5'- gGCGgACcugCugcGcGACUACGCGCUCCa -3'
miRNA:   3'- aCGCgUGaa-Gua-C-CUGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 53662 0.69 0.850016
Target:  5'- cGCGCGCUUCGcggcgugcucgcUGGACccuugaagcgccggGCGCG-UCCu -3'
miRNA:   3'- aCGCGUGAAGU------------ACCUGa-------------UGCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 55170 0.68 0.885044
Target:  5'- cGUGCGCgUCgacgacgugccgGUGGGCaUGCGCGUguUCCu -3'
miRNA:   3'- aCGCGUGaAG------------UACCUG-AUGCGCG--AGG- -5'
25562 5' -53.8 NC_005337.1 + 55218 0.74 0.549419
Target:  5'- gGCGCGCcgCAaGGACcagaccGCGCGUUCCg -3'
miRNA:   3'- aCGCGUGaaGUaCCUGa-----UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 55360 0.7 0.794168
Target:  5'- cGCGCGCUcuUCGaGGA----GCGCUCCg -3'
miRNA:   3'- aCGCGUGA--AGUaCCUgaugCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 55515 0.71 0.755923
Target:  5'- cGUGCGCUUCG-GGAacgAgGUGCUCUa -3'
miRNA:   3'- aCGCGUGAAGUaCCUga-UgCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 56048 0.77 0.405322
Target:  5'- cGUGCGgUUCGUGGACacgcucucgUACGUGCUCa -3'
miRNA:   3'- aCGCGUgAAGUACCUG---------AUGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 56328 0.67 0.904605
Target:  5'- --aGCGCUUCGUGGugcucaaGCUGCccaCGCUCUu -3'
miRNA:   3'- acgCGUGAAGUACC-------UGAUGc--GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 57032 0.69 0.829958
Target:  5'- -aCGgACUUCAUGGAgUACGUcUUCCu -3'
miRNA:   3'- acGCgUGAAGUACCUgAUGCGcGAGG- -5'
25562 5' -53.8 NC_005337.1 + 57417 0.96 0.029557
Target:  5'- cGCGCACgcggccuaCGUGGACUACGCGCUCCg -3'
miRNA:   3'- aCGCGUGaa------GUACCUGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 57481 0.67 0.917483
Target:  5'- cGCGCACcUCAcugaggugcuggUGGACaGCaucaucgaGCGCUUCg -3'
miRNA:   3'- aCGCGUGaAGU------------ACCUGaUG--------CGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 57495 0.69 0.844285
Target:  5'- gGUGCGCcUCAaGGACUaccagcucuucgugGCGCGCgucuUCCu -3'
miRNA:   3'- aCGCGUGaAGUaCCUGA--------------UGCGCG----AGG- -5'
25562 5' -53.8 NC_005337.1 + 57602 0.67 0.911488
Target:  5'- cUGCuGCGCUUCGUGGAgcccgaGCaGCUCa -3'
miRNA:   3'- -ACG-CGUGAAGUACCUgaug--CG-CGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.