miRNA display CGI


Results 81 - 100 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 58009 0.74 0.587675
Target:  5'- aGCGCGCUgaagaaggcgaccuUCggGGACggccgUGCGCUCCu -3'
miRNA:   3'- aCGCGUGA--------------AGuaCCUGau---GCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 58037 0.69 0.854848
Target:  5'- cGCGCuCUUCGacGGCgGCGUGCUCg -3'
miRNA:   3'- aCGCGuGAAGUacCUGaUGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 58361 0.73 0.611711
Target:  5'- cGCGCuCUUCGcGGACUucGCGCGCa-- -3'
miRNA:   3'- aCGCGuGAAGUaCCUGA--UGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 58460 0.74 0.594976
Target:  5'- aGUGCACgagCGUGGGCUuuuucucggccuccaGC-CGCUCCa -3'
miRNA:   3'- aCGCGUGaa-GUACCUGA---------------UGcGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 58651 0.73 0.643176
Target:  5'- cGCGCACgcg--GGAC-ACGCGCgCCa -3'
miRNA:   3'- aCGCGUGaaguaCCUGaUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 58894 0.78 0.387936
Target:  5'- cGUGCACUUCGUGGug-GCGCGgcaggaCUCCg -3'
miRNA:   3'- aCGCGUGAAGUACCugaUGCGC------GAGG- -5'
25562 5' -53.8 NC_005337.1 + 59334 0.66 0.943704
Target:  5'- cGgGUACUUCGaGGACgaccacuggUGCGCGgccgcCUCCg -3'
miRNA:   3'- aCgCGUGAAGUaCCUG---------AUGCGC-----GAGG- -5'
25562 5' -53.8 NC_005337.1 + 60957 0.68 0.877834
Target:  5'- aUGCGCAUg----GGGC-GCGCGC-CCa -3'
miRNA:   3'- -ACGCGUGaaguaCCUGaUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 63402 0.73 0.601245
Target:  5'- aGCGCGC----UGGACaugGCGCGCUCg -3'
miRNA:   3'- aCGCGUGaaguACCUGa--UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 65737 0.71 0.725999
Target:  5'- aGCGCugUUCAUGGc---CG-GCUCCg -3'
miRNA:   3'- aCGCGugAAGUACCugauGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 65852 0.69 0.846754
Target:  5'- aGCGgACUcgUCGUcgGGGC-GCGCGCUaCCa -3'
miRNA:   3'- aCGCgUGA--AGUA--CCUGaUGCGCGA-GG- -5'
25562 5' -53.8 NC_005337.1 + 66114 0.66 0.93896
Target:  5'- cUGCGCGCg-CGUGGAgUucaaguccaaGCGCGUggacggUCCg -3'
miRNA:   3'- -ACGCGUGaaGUACCUgA----------UGCGCG------AGG- -5'
25562 5' -53.8 NC_005337.1 + 66317 0.66 0.943704
Target:  5'- aGCGcCGCggUCGcGGGCUggcgacACGUGCUCg -3'
miRNA:   3'- aCGC-GUGa-AGUaCCUGA------UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 66860 0.69 0.854848
Target:  5'- aGCGCaaguGCUggcCGUGGACUucggcaacgGCGCGgaCCu -3'
miRNA:   3'- aCGCG----UGAa--GUACCUGA---------UGCGCgaGG- -5'
25562 5' -53.8 NC_005337.1 + 66909 0.73 0.632685
Target:  5'- gGCGCACgauguacucggUCAUGGGCUGCGCcaUCg -3'
miRNA:   3'- aCGCGUGa----------AGUACCUGAUGCGcgAGg -5'
25562 5' -53.8 NC_005337.1 + 66952 0.67 0.905243
Target:  5'- cGUGUACacCAUGaccugguccucGGCcACGCGCUCCa -3'
miRNA:   3'- aCGCGUGaaGUAC-----------CUGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 68403 0.74 0.559692
Target:  5'- cUGCGCGCgugCGUGGua-GCGCGCgCCg -3'
miRNA:   3'- -ACGCGUGaa-GUACCugaUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 68683 0.77 0.414197
Target:  5'- aGCGCGC-UCuUGGcCUGCGCGC-CCg -3'
miRNA:   3'- aCGCGUGaAGuACCuGAUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 69109 0.67 0.923229
Target:  5'- gGUGCACcUCGUcugcGGGCgagcCGCGgUCCa -3'
miRNA:   3'- aCGCGUGaAGUA----CCUGau--GCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 70329 0.68 0.877834
Target:  5'- cUGCGCAUcgUCAagggGGGCaACGCGCa-- -3'
miRNA:   3'- -ACGCGUGa-AGUa---CCUGaUGCGCGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.