miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 124324 0.68 0.870395
Target:  5'- gGCGCAggcgcUCAUGGACgcgGCGCGaUCg -3'
miRNA:   3'- aCGCGUga---AGUACCUGa--UGCGCgAGg -5'
25562 5' -53.8 NC_005337.1 + 124172 0.68 0.870395
Target:  5'- cGCGUgacCUUCGUGGACcucGCcCGCUUCg -3'
miRNA:   3'- aCGCGu--GAAGUACCUGa--UGcGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 122778 0.71 0.714821
Target:  5'- gGcCGCGgaUCAUGGacgcguuGCUGCGCGCggCCa -3'
miRNA:   3'- aC-GCGUgaAGUACC-------UGAUGCGCGa-GG- -5'
25562 5' -53.8 NC_005337.1 + 122388 0.66 0.93896
Target:  5'- cGUGCGCgaggUCGUGcugcgcGGCgGCGCGCggcgCCu -3'
miRNA:   3'- aCGCGUGa---AGUAC------CUGaUGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 120360 0.71 0.765681
Target:  5'- cGCGUcCUUCG-GGACccgGCGCGCcugCCg -3'
miRNA:   3'- aCGCGuGAAGUaCCUGa--UGCGCGa--GG- -5'
25562 5' -53.8 NC_005337.1 + 120286 0.67 0.928724
Target:  5'- cGCGCAaguaCAUGGcCgGCaCGCUCCg -3'
miRNA:   3'- aCGCGUgaa-GUACCuGaUGcGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 117354 0.66 0.943704
Target:  5'- -aCGUcgGCcgCGUGGACgUGCGCacGCUCCa -3'
miRNA:   3'- acGCG--UGaaGUACCUG-AUGCG--CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 117298 0.66 0.943704
Target:  5'- cGCGUGCUggagGUGGACgccuccgcgcACGCGUUCg -3'
miRNA:   3'- aCGCGUGAag--UACCUGa---------UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 115992 0.66 0.943704
Target:  5'- cGUGCACaUCGcgcUGGGCgUGCG-GCUCa -3'
miRNA:   3'- aCGCGUGaAGU---ACCUG-AUGCgCGAGg -5'
25562 5' -53.8 NC_005337.1 + 114970 0.66 0.933968
Target:  5'- cGCGCuccgcCUaCGUGGGCgGCGauauaguccuaCGCUCCa -3'
miRNA:   3'- aCGCGu----GAaGUACCUGaUGC-----------GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 114382 0.77 0.414197
Target:  5'- --aGCACgc---GGACUACGCGCUCCu -3'
miRNA:   3'- acgCGUGaaguaCCUGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 114145 0.75 0.539204
Target:  5'- aGCGCGcCUUCgccgaccucucgGUGGAggACGCGCUCUc -3'
miRNA:   3'- aCGCGU-GAAG------------UACCUgaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 112869 0.71 0.74605
Target:  5'- cGCGCGCUUCAUG----ACGuCGCUCa -3'
miRNA:   3'- aCGCGUGAAGUACcugaUGC-GCGAGg -5'
25562 5' -53.8 NC_005337.1 + 111194 0.69 0.838455
Target:  5'- cGCGCACgaugCcgGGcACggccgcCGCGUUCCg -3'
miRNA:   3'- aCGCGUGaa--GuaCC-UGau----GCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 110081 0.66 0.952452
Target:  5'- cGCGCGCcUCGccGGuaacggcgcgagGCUGCGCG-UCCa -3'
miRNA:   3'- aCGCGUGaAGUa-CC------------UGAUGCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 109468 0.7 0.812406
Target:  5'- gUGCGUGCgcgCGUGG---GCGCGCUuCCg -3'
miRNA:   3'- -ACGCGUGaa-GUACCugaUGCGCGA-GG- -5'
25562 5' -53.8 NC_005337.1 + 109263 0.66 0.9482
Target:  5'- cGCGCACgUCgaagcgGUGGAagcuguccaUGCGCGCguugcagCCg -3'
miRNA:   3'- aCGCGUGaAG------UACCUg--------AUGCGCGa------GG- -5'
25562 5' -53.8 NC_005337.1 + 108426 0.78 0.354668
Target:  5'- cGUGUACgggcUCAUGGGCUuccggaacaGCGCGCUCUu -3'
miRNA:   3'- aCGCGUGa---AGUACCUGA---------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 105954 0.69 0.838455
Target:  5'- gGCuGCugUUCcUGGACgACGCGCg-- -3'
miRNA:   3'- aCG-CGugAAGuACCUGaUGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 105790 0.66 0.9482
Target:  5'- cGCGCGCcgCGcGGcCgcaucCGUGCUCCa -3'
miRNA:   3'- aCGCGUGaaGUaCCuGau---GCGCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.