miRNA display CGI


Results 61 - 80 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 100297 0.68 0.865823
Target:  5'- cGCGCA--UCcUGGGCUGCGUcccccgcgaguccucGCUCUa -3'
miRNA:   3'- aCGCGUgaAGuACCUGAUGCG---------------CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 100100 0.72 0.674556
Target:  5'- gGCGCGCcgCGUGGAgCUGCGCa-UCCc -3'
miRNA:   3'- aCGCGUGaaGUACCU-GAUGCGcgAGG- -5'
25562 5' -53.8 NC_005337.1 + 99708 0.69 0.854848
Target:  5'- cUGCGCGCggccaucgUCGcGGACaggACGCuCUCCc -3'
miRNA:   3'- -ACGCGUGa-------AGUaCCUGa--UGCGcGAGG- -5'
25562 5' -53.8 NC_005337.1 + 99585 0.71 0.725999
Target:  5'- gUGCgGCGCUUCGggcgGGACUGCGcCGUg-- -3'
miRNA:   3'- -ACG-CGUGAAGUa---CCUGAUGC-GCGagg -5'
25562 5' -53.8 NC_005337.1 + 99471 0.7 0.793239
Target:  5'- gUGCGCGagggcguCUUCGUGGccgugcggcGCUACGCGgaCUg -3'
miRNA:   3'- -ACGCGU-------GAAGUACC---------UGAUGCGCgaGG- -5'
25562 5' -53.8 NC_005337.1 + 99398 0.68 0.869638
Target:  5'- gGCGCGCUcguagaguucacgUCGgaGGAUgGCGCGCcgCCg -3'
miRNA:   3'- aCGCGUGA-------------AGUa-CCUGaUGCGCGa-GG- -5'
25562 5' -53.8 NC_005337.1 + 99220 0.68 0.892017
Target:  5'- cGCGCGC-----GGACUucgACGCGgUCCa -3'
miRNA:   3'- aCGCGUGaaguaCCUGA---UGCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 98991 0.73 0.643176
Target:  5'- aGUGCAUcgaggcCGUGGAgUucGCGCGCUCCc -3'
miRNA:   3'- aCGCGUGaa----GUACCUgA--UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 98885 0.82 0.219322
Target:  5'- cGCGCGCgc---GGACUGCGCGCUCg -3'
miRNA:   3'- aCGCGUGaaguaCCUGAUGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 98773 0.68 0.892017
Target:  5'- gGCaGCGC--CGUGGACcgguacaACGCGCUCUc -3'
miRNA:   3'- aCG-CGUGaaGUACCUGa------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 98738 0.69 0.838455
Target:  5'- cGCGUGCUgaccgUCAUGGACUuccuCGCGaugCUg -3'
miRNA:   3'- aCGCGUGA-----AGUACCUGAu---GCGCga-GG- -5'
25562 5' -53.8 NC_005337.1 + 97139 0.67 0.928186
Target:  5'- cUGCGCGugccCUUCGUcgucuccuacgacGGcgccucggcGCUGCuGCGCUCCg -3'
miRNA:   3'- -ACGCGU----GAAGUA-------------CC---------UGAUG-CGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 97074 0.73 0.601245
Target:  5'- gGCGCGCg--GUGGuCUGCGUGC-CCa -3'
miRNA:   3'- aCGCGUGaagUACCuGAUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 97055 0.76 0.450856
Target:  5'- aUGCGCuuCUUCGUGGACUccuucaagGCGCGC-Cg -3'
miRNA:   3'- -ACGCGu-GAAGUACCUGA--------UGCGCGaGg -5'
25562 5' -53.8 NC_005337.1 + 95815 0.67 0.925457
Target:  5'- cGCGCACcgCAUgaaggcguacgccucGGGCgugaugACGCGCcCCu -3'
miRNA:   3'- aCGCGUGaaGUA---------------CCUGa-----UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 95247 0.66 0.943704
Target:  5'- cGUGCAC-UCGUGcGCgcggcagACGCGCgggCCc -3'
miRNA:   3'- aCGCGUGaAGUACcUGa------UGCGCGa--GG- -5'
25562 5' -53.8 NC_005337.1 + 95000 0.66 0.93896
Target:  5'- cGCGUACUUgcgcgaCAgcggcGGcuGCUGCGCGUUCUu -3'
miRNA:   3'- aCGCGUGAA------GUa----CC--UGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 94601 0.71 0.715841
Target:  5'- aGCGCACguacgugcCcgGGGCcACGCGCcCCa -3'
miRNA:   3'- aCGCGUGaa------GuaCCUGaUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 93830 0.67 0.911488
Target:  5'- gGCGUcg-UCAaGGGCcgUGCGCUCCg -3'
miRNA:   3'- aCGCGugaAGUaCCUGauGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 93793 0.66 0.952452
Target:  5'- cGCGCuACgaCGUGGu---CGCGgCUCCa -3'
miRNA:   3'- aCGCG-UGaaGUACCugauGCGC-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.