miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 55218 0.74 0.549419
Target:  5'- gGCGCGCcgCAaGGACcagaccGCGCGUUCCg -3'
miRNA:   3'- aCGCGUGaaGUaCCUGa-----UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 56048 0.77 0.405322
Target:  5'- cGUGCGgUUCGUGGACacgcucucgUACGUGCUCa -3'
miRNA:   3'- aCGCGUgAAGUACCUG---------AUGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 80567 0.8 0.286712
Target:  5'- -aUGCGCUUCAUGGGCUauuuaggACGCGC-CCg -3'
miRNA:   3'- acGCGUGAAGUACCUGA-------UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 131081 0.8 0.273886
Target:  5'- aGCGCGagUUCGUGGuCUGCGCGCUggCCa -3'
miRNA:   3'- aCGCGUg-AAGUACCuGAUGCGCGA--GG- -5'
25562 5' -53.8 NC_005337.1 + 98885 0.82 0.219322
Target:  5'- cGCGCGCgc---GGACUGCGCGCUCg -3'
miRNA:   3'- aCGCGUGaaguaCCUGAUGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 97074 0.73 0.601245
Target:  5'- gGCGCGCg--GUGGuCUGCGUGC-CCa -3'
miRNA:   3'- aCGCGUGaagUACCuGAUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 128791 0.73 0.611711
Target:  5'- gUGCGCGCgaUCAUGGGCgggugcgGCuGCGC-CCu -3'
miRNA:   3'- -ACGCGUGa-AGUACCUGa------UG-CGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 120360 0.71 0.765681
Target:  5'- cGCGUcCUUCG-GGACccgGCGCGCcugCCg -3'
miRNA:   3'- aCGCGuGAAGUaCCUGa--UGCGCGa--GG- -5'
25562 5' -53.8 NC_005337.1 + 129200 0.71 0.755923
Target:  5'- gGUGC-CUUCGUGGACgccccagaGCGCUgCu -3'
miRNA:   3'- aCGCGuGAAGUACCUGaug-----CGCGAgG- -5'
25562 5' -53.8 NC_005337.1 + 112869 0.71 0.74605
Target:  5'- cGCGCGCUUCAUG----ACGuCGCUCa -3'
miRNA:   3'- aCGCGUGAAGUACcugaUGC-GCGAGg -5'
25562 5' -53.8 NC_005337.1 + 47778 0.71 0.736072
Target:  5'- cGCGUACUUCGaGGGCgGgGUGCUgCg -3'
miRNA:   3'- aCGCGUGAAGUaCCUGaUgCGCGAgG- -5'
25562 5' -53.8 NC_005337.1 + 130162 0.71 0.725999
Target:  5'- cGCGCGCUUUcgGaGGCcgUGCGCGCg-- -3'
miRNA:   3'- aCGCGUGAAGuaC-CUG--AUGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 99585 0.71 0.725999
Target:  5'- gUGCgGCGCUUCGggcgGGACUGCGcCGUg-- -3'
miRNA:   3'- -ACG-CGUGAAGUa---CCUGAUGC-GCGagg -5'
25562 5' -53.8 NC_005337.1 + 65737 0.71 0.725999
Target:  5'- aGCGCugUUCAUGGc---CG-GCUCCg -3'
miRNA:   3'- aCGCGugAAGUACCugauGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 47332 0.72 0.70971
Target:  5'- gGCGCGCguggUCAUGGACgccgACGacaacaucaucggcaUGCUCUu -3'
miRNA:   3'- aCGCGUGa---AGUACCUGa---UGC---------------GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 103165 0.72 0.69531
Target:  5'- cGCGguCacCGUGGAgaACGCGCUCg -3'
miRNA:   3'- aCGCguGaaGUACCUgaUGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 52814 0.72 0.674556
Target:  5'- gGCGgACcugCugcGcGACUACGCGCUCCa -3'
miRNA:   3'- aCGCgUGaa-Gua-C-CUGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 80147 0.73 0.653657
Target:  5'- aUGCGCGCggCGcGGccguCGCGCUCCa -3'
miRNA:   3'- -ACGCGUGaaGUaCCugauGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 1209 0.73 0.643176
Target:  5'- cGCGCAUUUC---GACcACGCGCUCUc -3'
miRNA:   3'- aCGCGUGAAGuacCUGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 52115 0.73 0.615903
Target:  5'- gUGCGCgacgggccggccaugGcCUUCGUGGACgcgugucGCGCGCUCa -3'
miRNA:   3'- -ACGCG---------------U-GAAGUACCUGa------UGCGCGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.