miRNA display CGI


Results 61 - 80 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 52814 0.72 0.674556
Target:  5'- gGCGgACcugCugcGcGACUACGCGCUCCa -3'
miRNA:   3'- aCGCgUGaa-Gua-C-CUGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 103165 0.72 0.69531
Target:  5'- cGCGguCacCGUGGAgaACGCGCUCg -3'
miRNA:   3'- aCGCguGaaGUACCUgaUGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 74039 0.7 0.784813
Target:  5'- -aCGU-CUUCGUGGACUGCGgGgaCCu -3'
miRNA:   3'- acGCGuGAAGUACCUGAUGCgCgaGG- -5'
25562 5' -53.8 NC_005337.1 + 99471 0.7 0.793239
Target:  5'- gUGCGCGagggcguCUUCGUGGccgugcggcGCUACGCGgaCUg -3'
miRNA:   3'- -ACGCGU-------GAAGUACC---------UGAUGCGCgaGG- -5'
25562 5' -53.8 NC_005337.1 + 70875 0.7 0.794168
Target:  5'- aGCGCGC--CAUGucCaGCGCGCUCUg -3'
miRNA:   3'- aCGCGUGaaGUACcuGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 55360 0.7 0.794168
Target:  5'- cGCGCGCUcuUCGaGGA----GCGCUCCg -3'
miRNA:   3'- aCGCGUGA--AGUaCCUgaugCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 70611 0.7 0.799707
Target:  5'- cGCGaCAUgcUCGUGGACgucuccgagacggACGUGCUCUa -3'
miRNA:   3'- aCGC-GUGa-AGUACCUGa------------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 13830 0.69 0.821273
Target:  5'- aGCGCGCcccgCAgGGACUcgggggGCGUgaGCUCCg -3'
miRNA:   3'- aCGCGUGaa--GUaCCUGA------UGCG--CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 47591 0.69 0.829958
Target:  5'- aGC-CGCUgggCGUGGGCgacgccGCGCGCgcggCCg -3'
miRNA:   3'- aCGcGUGAa--GUACCUGa-----UGCGCGa---GG- -5'
25562 5' -53.8 NC_005337.1 + 57032 0.69 0.829958
Target:  5'- -aCGgACUUCAUGGAgUACGUcUUCCu -3'
miRNA:   3'- acGCgUGAAGUACCUgAUGCGcGAGG- -5'
25562 5' -53.8 NC_005337.1 + 71406 0.7 0.784813
Target:  5'- aGCGCaacuACUUCc---GCUACGCGUUCCu -3'
miRNA:   3'- aCGCG----UGAAGuaccUGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 5490 0.7 0.775314
Target:  5'- gUGCGCACgccCGUGGACccgaauccgccUGCGC-CUCUu -3'
miRNA:   3'- -ACGCGUGaa-GUACCUG-----------AUGCGcGAGG- -5'
25562 5' -53.8 NC_005337.1 + 47332 0.72 0.70971
Target:  5'- gGCGCGCguggUCAUGGACgccgACGacaacaucaucggcaUGCUCUu -3'
miRNA:   3'- aCGCGUGa---AGUACCUGa---UGC---------------GCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 65737 0.71 0.725999
Target:  5'- aGCGCugUUCAUGGc---CG-GCUCCg -3'
miRNA:   3'- aCGCGugAAGUACCugauGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 99585 0.71 0.725999
Target:  5'- gUGCgGCGCUUCGggcgGGACUGCGcCGUg-- -3'
miRNA:   3'- -ACG-CGUGAAGUa---CCUGAUGC-GCGagg -5'
25562 5' -53.8 NC_005337.1 + 130162 0.71 0.725999
Target:  5'- cGCGCGCUUUcgGaGGCcgUGCGCGCg-- -3'
miRNA:   3'- aCGCGUGAAGuaC-CUG--AUGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 47778 0.71 0.736072
Target:  5'- cGCGUACUUCGaGGGCgGgGUGCUgCg -3'
miRNA:   3'- aCGCGUGAAGUaCCUGaUgCGCGAgG- -5'
25562 5' -53.8 NC_005337.1 + 112869 0.71 0.74605
Target:  5'- cGCGCGCUUCAUG----ACGuCGCUCa -3'
miRNA:   3'- aCGCGUGAAGUACcugaUGC-GCGAGg -5'
25562 5' -53.8 NC_005337.1 + 129200 0.71 0.755923
Target:  5'- gGUGC-CUUCGUGGACgccccagaGCGCUgCu -3'
miRNA:   3'- aCGCGuGAAGUACCUGaug-----CGCGAgG- -5'
25562 5' -53.8 NC_005337.1 + 120360 0.71 0.765681
Target:  5'- cGCGUcCUUCG-GGACccgGCGCGCcugCCg -3'
miRNA:   3'- aCGCGuGAAGUaCCUGa--UGCGCGa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.