miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 98991 0.73 0.643176
Target:  5'- aGUGCAUcgaggcCGUGGAgUucGCGCGCUCCc -3'
miRNA:   3'- aCGCGUGaa----GUACCUgA--UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 105226 0.73 0.618
Target:  5'- cUGCGCGCUcgcgggcgcccggcUCAUGGACgagGCccgccucgucgagGCGCUCg -3'
miRNA:   3'- -ACGCGUGA--------------AGUACCUGa--UG-------------CGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 97055 0.76 0.450856
Target:  5'- aUGCGCuuCUUCGUGGACUccuucaagGCGCGC-Cg -3'
miRNA:   3'- -ACGCGu-GAAGUACCUGA--------UGCGCGaGg -5'
25562 5' -53.8 NC_005337.1 + 91981 0.84 0.180732
Target:  5'- cGCGCuCUUCGUGGGCUuccuggcucugauguACGCGCUCa -3'
miRNA:   3'- aCGCGuGAAGUACCUGA---------------UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 23472 0.7 0.803369
Target:  5'- cGUGUccgACUccgaCGUGGAgaACGUGCUCCg -3'
miRNA:   3'- aCGCG---UGAa---GUACCUgaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 122778 0.71 0.714821
Target:  5'- gGcCGCGgaUCAUGGacgcguuGCUGCGCGCggCCa -3'
miRNA:   3'- aC-GCGUgaAGUACC-------UGAUGCGCGa-GG- -5'
25562 5' -53.8 NC_005337.1 + 63402 0.73 0.601245
Target:  5'- aGCGCGC----UGGACaugGCGCGCUCg -3'
miRNA:   3'- aCGCGUGaaguACCUGa--UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 103898 0.84 0.165499
Target:  5'- cGCGCGCgaCAUGGACgugcuccGCGUGCUCCu -3'
miRNA:   3'- aCGCGUGaaGUACCUGa------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 100100 0.72 0.674556
Target:  5'- gGCGCGCcgCGUGGAgCUGCGCa-UCCc -3'
miRNA:   3'- aCGCGUGaaGUACCU-GAUGCGcgAGG- -5'
25562 5' -53.8 NC_005337.1 + 57417 0.96 0.029557
Target:  5'- cGCGCACgcggccuaCGUGGACUACGCGCUCCg -3'
miRNA:   3'- aCGCGUGaa------GUACCUGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 58361 0.73 0.611711
Target:  5'- cGCGCuCUUCGcGGACUucGCGCGCa-- -3'
miRNA:   3'- aCGCGuGAAGUaCCUGA--UGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 16055 0.72 0.66412
Target:  5'- cGCGCACUgCAUGauGACgucggGCG-GCUCCg -3'
miRNA:   3'- aCGCGUGAaGUAC--CUGa----UGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 127462 0.74 0.559692
Target:  5'- aUGCGCACgcUCGUGGACaGCG-GCUgCg -3'
miRNA:   3'- -ACGCGUGa-AGUACCUGaUGCgCGAgG- -5'
25562 5' -53.8 NC_005337.1 + 114145 0.75 0.539204
Target:  5'- aGCGCGcCUUCgccgaccucucgGUGGAggACGCGCUCUc -3'
miRNA:   3'- aCGCGU-GAAG------------UACCUgaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 58894 0.78 0.387936
Target:  5'- cGUGCACUUCGUGGug-GCGCGgcaggaCUCCg -3'
miRNA:   3'- aCGCGUGAAGUACCugaUGCGC------GAGG- -5'
25562 5' -53.8 NC_005337.1 + 102484 0.8 0.280578
Target:  5'- cGCGUGCUcagCGUGGAggACGUGCUCCu -3'
miRNA:   3'- aCGCGUGAa--GUACCUgaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 35374 0.69 0.829958
Target:  5'- cGUGUACUcCccGGGCUcgaGCGCGCagUCCg -3'
miRNA:   3'- aCGCGUGAaGuaCCUGA---UGCGCG--AGG- -5'
25562 5' -53.8 NC_005337.1 + 101027 0.7 0.803369
Target:  5'- gGCGUggACUcgCGUGGGCccguuucUGCGCUCCg -3'
miRNA:   3'- aCGCG--UGAa-GUACCUGau-----GCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 55515 0.71 0.755923
Target:  5'- cGUGCGCUUCG-GGAacgAgGUGCUCUa -3'
miRNA:   3'- aCGCGUGAAGUaCCUga-UgCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 94601 0.71 0.715841
Target:  5'- aGCGCACguacgugcCcgGGGCcACGCGCcCCa -3'
miRNA:   3'- aCGCGUGaa------GuaCCUGaUGCGCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.