miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 5523 0.7 0.794168
Target:  5'- cGCGCGCcggc-GGAgCUcugucACGCGCUCCa -3'
miRNA:   3'- aCGCGUGaaguaCCU-GA-----UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 63402 0.73 0.601245
Target:  5'- aGCGCGC----UGGACaugGCGCGCUCg -3'
miRNA:   3'- aCGCGUGaaguACCUGa--UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 103898 0.84 0.165499
Target:  5'- cGCGCGCgaCAUGGACgugcuccGCGUGCUCCu -3'
miRNA:   3'- aCGCGUGaaGUACCUGa------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 43575 0.7 0.784813
Target:  5'- cGCGCGCUgaaggaggugcUgAUGGcCUACGCGgguaUCCg -3'
miRNA:   3'- aCGCGUGA-----------AgUACCuGAUGCGCg---AGG- -5'
25562 5' -53.8 NC_005337.1 + 57417 0.96 0.029557
Target:  5'- cGCGCACgcggccuaCGUGGACUACGCGCUCCg -3'
miRNA:   3'- aCGCGUGaa------GUACCUGAUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 35274 0.68 0.870395
Target:  5'- cGCGCACcUCggGGG--GCG-GCUCCa -3'
miRNA:   3'- aCGCGUGaAGuaCCUgaUGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 102484 0.8 0.280578
Target:  5'- cGCGUGCUcagCGUGGAggACGUGCUCCu -3'
miRNA:   3'- aCGCGUGAa--GUACCUgaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 99398 0.68 0.869638
Target:  5'- gGCGCGCUcguagaguucacgUCGgaGGAUgGCGCGCcgCCg -3'
miRNA:   3'- aCGCGUGA-------------AGUa-CCUGaUGCGCGa-GG- -5'
25562 5' -53.8 NC_005337.1 + 25293 0.68 0.862731
Target:  5'- cGCGCACggCGggcGGGCcGCGCGUcgaCCg -3'
miRNA:   3'- aCGCGUGaaGUa--CCUGaUGCGCGa--GG- -5'
25562 5' -53.8 NC_005337.1 + 65852 0.69 0.846754
Target:  5'- aGCGgACUcgUCGUcgGGGC-GCGCGCUaCCa -3'
miRNA:   3'- aCGCgUGA--AGUA--CCUGaUGCGCGA-GG- -5'
25562 5' -53.8 NC_005337.1 + 111194 0.69 0.838455
Target:  5'- cGCGCACgaugCcgGGcACggccgcCGCGUUCCg -3'
miRNA:   3'- aCGCGUGaa--GuaCC-UGau----GCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 35374 0.69 0.829958
Target:  5'- cGUGUACUcCccGGGCUcgaGCGCGCagUCCg -3'
miRNA:   3'- aCGCGUGAaGuaCCUGA---UGCGCG--AGG- -5'
25562 5' -53.8 NC_005337.1 + 101027 0.7 0.803369
Target:  5'- gGCGUggACUcgCGUGGGCccguuucUGCGCUCCg -3'
miRNA:   3'- aCGCG--UGAa-GUACCUGau-----GCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 45219 0.71 0.719914
Target:  5'- cGCGCcCgcgUCAUGGuggucagcagcgcgcGCaUGCGCGUUCCg -3'
miRNA:   3'- aCGCGuGa--AGUACC---------------UG-AUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 100100 0.72 0.674556
Target:  5'- gGCGCGCcgCGUGGAgCUGCGCa-UCCc -3'
miRNA:   3'- aCGCGUGaaGUACCU-GAUGCGcgAGG- -5'
25562 5' -53.8 NC_005337.1 + 98991 0.73 0.643176
Target:  5'- aGUGCAUcgaggcCGUGGAgUucGCGCGCUCCc -3'
miRNA:   3'- aCGCGUGaa----GUACCUgA--UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 105226 0.73 0.618
Target:  5'- cUGCGCGCUcgcgggcgcccggcUCAUGGACgagGCccgccucgucgagGCGCUCg -3'
miRNA:   3'- -ACGCGUGA--------------AGUACCUGa--UG-------------CGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 127462 0.74 0.559692
Target:  5'- aUGCGCACgcUCGUGGACaGCG-GCUgCg -3'
miRNA:   3'- -ACGCGUGa-AGUACCUGaUGCgCGAgG- -5'
25562 5' -53.8 NC_005337.1 + 114145 0.75 0.539204
Target:  5'- aGCGCGcCUUCgccgaccucucgGUGGAggACGCGCUCUc -3'
miRNA:   3'- aCGCGU-GAAG------------UACCUgaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 58894 0.78 0.387936
Target:  5'- cGUGCACUUCGUGGug-GCGCGgcaggaCUCCg -3'
miRNA:   3'- aCGCGUGAAGUACCugaUGCGC------GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.