miRNA display CGI


Results 61 - 80 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 101027 0.7 0.803369
Target:  5'- gGCGUggACUcgCGUGGGCccguuucUGCGCUCCg -3'
miRNA:   3'- aCGCG--UGAa-GUACCUGau-----GCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 98738 0.69 0.838455
Target:  5'- cGCGUGCUgaccgUCAUGGACUuccuCGCGaugCUg -3'
miRNA:   3'- aCGCGUGA-----AGUACCUGAu---GCGCga-GG- -5'
25562 5' -53.8 NC_005337.1 + 108426 0.78 0.354668
Target:  5'- cGUGUACgggcUCAUGGGCUuccggaacaGCGCGCUCUu -3'
miRNA:   3'- aCGCGUGa---AGUACCUGA---------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 68683 0.77 0.414197
Target:  5'- aGCGCGC-UCuUGGcCUGCGCGC-CCg -3'
miRNA:   3'- aCGCGUGaAGuACCuGAUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 50664 0.74 0.549419
Target:  5'- aGCGCugUggaucgCGUGGAUaACGCcaGCUCCu -3'
miRNA:   3'- aCGCGugAa-----GUACCUGaUGCG--CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 127392 0.74 0.580391
Target:  5'- cGCGCGCgaCAUGGACggGCGCacGCUgCu -3'
miRNA:   3'- aCGCGUGaaGUACCUGa-UGCG--CGAgG- -5'
25562 5' -53.8 NC_005337.1 + 66909 0.73 0.632685
Target:  5'- gGCGCACgauguacucggUCAUGGGCUGCGCcaUCg -3'
miRNA:   3'- aCGCGUGa----------AGUACCUGAUGCGcgAGg -5'
25562 5' -53.8 NC_005337.1 + 16055 0.72 0.66412
Target:  5'- cGCGCACUgCAUGauGACgucggGCG-GCUCCg -3'
miRNA:   3'- aCGCGUGAaGUAC--CUGa----UGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 122778 0.71 0.714821
Target:  5'- gGcCGCGgaUCAUGGacgcguuGCUGCGCGCggCCa -3'
miRNA:   3'- aC-GCGUgaAGUACC-------UGAUGCGCGa-GG- -5'
25562 5' -53.8 NC_005337.1 + 81542 0.71 0.736072
Target:  5'- cGCGCGCUUCAgcucGGC-GCGCaGCUCg -3'
miRNA:   3'- aCGCGUGAAGUac--CUGaUGCG-CGAGg -5'
25562 5' -53.8 NC_005337.1 + 95815 0.67 0.925457
Target:  5'- cGCGCACcgCAUgaaggcguacgccucGGGCgugaugACGCGCcCCu -3'
miRNA:   3'- aCGCGUGaaGUA---------------CCUGa-----UGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 100560 0.67 0.923229
Target:  5'- aUGCGCAgcccucagaUUUcCAUGGGCcucaucuCGCGCUCg -3'
miRNA:   3'- -ACGCGU---------GAA-GUACCUGau-----GCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 57495 0.69 0.844285
Target:  5'- gGUGCGCcUCAaGGACUaccagcucuucgugGCGCGCgucuUCCu -3'
miRNA:   3'- aCGCGUGaAGUaCCUGA--------------UGCGCG----AGG- -5'
25562 5' -53.8 NC_005337.1 + 53662 0.69 0.850016
Target:  5'- cGCGCGCUUCGcggcgugcucgcUGGACccuugaagcgccggGCGCG-UCCu -3'
miRNA:   3'- aCGCGUGAAGU------------ACCUGa-------------UGCGCgAGG- -5'
25562 5' -53.8 NC_005337.1 + 99398 0.68 0.869638
Target:  5'- gGCGCGCUcguagaguucacgUCGgaGGAUgGCGCGCcgCCg -3'
miRNA:   3'- aCGCGUGA-------------AGUa-CCUGaUGCGCGa-GG- -5'
25562 5' -53.8 NC_005337.1 + 35274 0.68 0.870395
Target:  5'- cGCGCACcUCggGGG--GCG-GCUCCa -3'
miRNA:   3'- aCGCGUGaAGuaCCUgaUGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 55170 0.68 0.885044
Target:  5'- cGUGCGCgUCgacgacgugccgGUGGGCaUGCGCGUguUCCu -3'
miRNA:   3'- aCGCGUGaAG------------UACCUG-AUGCGCG--AGG- -5'
25562 5' -53.8 NC_005337.1 + 39036 0.68 0.898752
Target:  5'- cGCGCACgagugCAcGGACcaguCGCGCgaCCg -3'
miRNA:   3'- aCGCGUGaa---GUaCCUGau--GCGCGa-GG- -5'
25562 5' -53.8 NC_005337.1 + 52781 0.67 0.905243
Target:  5'- cGCGaCGCgUCGUGGuACgcCGCGUacUCCg -3'
miRNA:   3'- aCGC-GUGaAGUACC-UGauGCGCG--AGG- -5'
25562 5' -53.8 NC_005337.1 + 93830 0.67 0.911488
Target:  5'- gGCGUcg-UCAaGGGCcgUGCGCUCCg -3'
miRNA:   3'- aCGCGugaAGUaCCUGauGCGCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.