miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25562 5' -53.8 NC_005337.1 + 1209 0.73 0.643176
Target:  5'- cGCGCAUUUC---GACcACGCGCUCUc -3'
miRNA:   3'- aCGCGUGAAGuacCUGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 3373 0.66 0.9482
Target:  5'- aUGuCGUcgUUCGUGGGCgagaaGCGCGCgugcgCCa -3'
miRNA:   3'- -AC-GCGugAAGUACCUGa----UGCGCGa----GG- -5'
25562 5' -53.8 NC_005337.1 + 3466 0.66 0.93896
Target:  5'- gGCgGCACUgggUCGUcGcGACUGCGCGUgCUg -3'
miRNA:   3'- aCG-CGUGA---AGUA-C-CUGAUGCGCGaGG- -5'
25562 5' -53.8 NC_005337.1 + 4081 0.67 0.911488
Target:  5'- -uCGCACUcCA-GGAUgagcuccGCGUGCUCCg -3'
miRNA:   3'- acGCGUGAaGUaCCUGa------UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 5490 0.7 0.775314
Target:  5'- gUGCGCACgccCGUGGACccgaauccgccUGCGC-CUCUu -3'
miRNA:   3'- -ACGCGUGaa-GUACCUG-----------AUGCGcGAGG- -5'
25562 5' -53.8 NC_005337.1 + 5523 0.7 0.794168
Target:  5'- cGCGCGCcggc-GGAgCUcugucACGCGCUCCa -3'
miRNA:   3'- aCGCGUGaaguaCCU-GA-----UGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 5972 0.68 0.885044
Target:  5'- cGCGCGCgagCAgacGGGCcagGCGCGCg-- -3'
miRNA:   3'- aCGCGUGaa-GUa--CCUGa--UGCGCGagg -5'
25562 5' -53.8 NC_005337.1 + 11375 0.66 0.952038
Target:  5'- aGCGCGCUcgccaUCGgcGGGCUgAUGCGCcagggccccggguUCCg -3'
miRNA:   3'- aCGCGUGA-----AGUa-CCUGA-UGCGCG-------------AGG- -5'
25562 5' -53.8 NC_005337.1 + 13830 0.69 0.821273
Target:  5'- aGCGCGCcccgCAgGGACUcgggggGCGUgaGCUCCg -3'
miRNA:   3'- aCGCGUGaa--GUaCCUGA------UGCG--CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 13911 0.66 0.933968
Target:  5'- aGCGuCAUcgucgggUCGUGGGCggGCGCagccccgucguGCUCCa -3'
miRNA:   3'- aCGC-GUGa------AGUACCUGa-UGCG-----------CGAGG- -5'
25562 5' -53.8 NC_005337.1 + 16055 0.72 0.66412
Target:  5'- cGCGCACUgCAUGauGACgucggGCG-GCUCCg -3'
miRNA:   3'- aCGCGUGAaGUAC--CUGa----UGCgCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 17030 0.66 0.93896
Target:  5'- cGCGCACUgCGUcgcguuccgcgcGGuCUGCaCGUUCCg -3'
miRNA:   3'- aCGCGUGAaGUA------------CCuGAUGcGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 18794 0.69 0.846754
Target:  5'- gGCGCACcUCGugguUGGGCUucagGCGCauguCUCCg -3'
miRNA:   3'- aCGCGUGaAGU----ACCUGA----UGCGc---GAGG- -5'
25562 5' -53.8 NC_005337.1 + 20780 0.66 0.952452
Target:  5'- -aCGCGCUUCGcggGGACggGCGUGC-Cg -3'
miRNA:   3'- acGCGUGAAGUa--CCUGa-UGCGCGaGg -5'
25562 5' -53.8 NC_005337.1 + 21911 0.93 0.047554
Target:  5'- cGCGCGCUUCAUGGaggugGCcGCGCGCUCCg -3'
miRNA:   3'- aCGCGUGAAGUACC-----UGaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 22677 0.68 0.885044
Target:  5'- aGCGCuucGCggaCAUGGACcugaacgGCGCGUUCa -3'
miRNA:   3'- aCGCG---UGaa-GUACCUGa------UGCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 23052 0.68 0.877834
Target:  5'- gGCGCcCUUCA-GGAUg--GCGCUCg -3'
miRNA:   3'- aCGCGuGAAGUaCCUGaugCGCGAGg -5'
25562 5' -53.8 NC_005337.1 + 23261 0.68 0.892017
Target:  5'- aGCGCAagaUCGaGcGCUACGCGCagUCCa -3'
miRNA:   3'- aCGCGUga-AGUaCcUGAUGCGCG--AGG- -5'
25562 5' -53.8 NC_005337.1 + 23472 0.7 0.803369
Target:  5'- cGUGUccgACUccgaCGUGGAgaACGUGCUCCg -3'
miRNA:   3'- aCGCG---UGAa---GUACCUgaUGCGCGAGG- -5'
25562 5' -53.8 NC_005337.1 + 24387 0.66 0.952452
Target:  5'- cGCGCAC---GUGGcggACGUGCUCg -3'
miRNA:   3'- aCGCGUGaagUACCugaUGCGCGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.