miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25563 3' -57.7 NC_005337.1 + 64300 0.66 0.845492
Target:  5'- -gGCGgucGCGUCcGGCGUcuuGCG-CGUGCc -3'
miRNA:   3'- gaUGCa--CGCGGaCCGCG---UGCaGCACG- -5'
25563 3' -57.7 NC_005337.1 + 86411 0.66 0.845492
Target:  5'- uCUGCGUcCGCC--GCGCcCGaCGUGCa -3'
miRNA:   3'- -GAUGCAcGCGGacCGCGuGCaGCACG- -5'
25563 3' -57.7 NC_005337.1 + 123983 0.66 0.845492
Target:  5'- -aACG-GCGCCgauGCGCGCGcCaUGCu -3'
miRNA:   3'- gaUGCaCGCGGac-CGCGUGCaGcACG- -5'
25563 3' -57.7 NC_005337.1 + 10000 0.66 0.845492
Target:  5'- uUACcUG-GCC-GGCGCcgccguCGUCGUGCu -3'
miRNA:   3'- gAUGcACgCGGaCCGCGu-----GCAGCACG- -5'
25563 3' -57.7 NC_005337.1 + 39922 0.66 0.845492
Target:  5'- aCUACGUGUGgC-GcGCGCugaGCGUcaCGUGCu -3'
miRNA:   3'- -GAUGCACGCgGaC-CGCG---UGCA--GCACG- -5'
25563 3' -57.7 NC_005337.1 + 48881 0.66 0.845492
Target:  5'- -gGCGgagaGCGCC--GCGCACGgcuccaGUGCa -3'
miRNA:   3'- gaUGCa---CGCGGacCGCGUGCag----CACG- -5'
25563 3' -57.7 NC_005337.1 + 47887 0.66 0.844695
Target:  5'- -cGCGcagcCGCCUGGCGgCAUGUucccgcacaagacCGUGCc -3'
miRNA:   3'- gaUGCac--GCGGACCGC-GUGCA-------------GCACG- -5'
25563 3' -57.7 NC_005337.1 + 89124 0.66 0.844695
Target:  5'- uCUGCcgacugGCGCCgGGCGCgacuagcugcccgACGUCuggGUGCu -3'
miRNA:   3'- -GAUGca----CGCGGaCCGCG-------------UGCAG---CACG- -5'
25563 3' -57.7 NC_005337.1 + 2993 0.66 0.842291
Target:  5'- -cGCGccUGCGaCUGGCGgACGggcuccggcagcgCGUGCg -3'
miRNA:   3'- gaUGC--ACGCgGACCGCgUGCa------------GCACG- -5'
25563 3' -57.7 NC_005337.1 + 94588 0.66 0.837433
Target:  5'- -cGCGUGuCGaagaaGCGCACGUaCGUGCc -3'
miRNA:   3'- gaUGCAC-GCggac-CGCGUGCA-GCACG- -5'
25563 3' -57.7 NC_005337.1 + 128768 0.66 0.837433
Target:  5'- -gGCGcGCGaaCCUGGUaGCACGg-GUGCg -3'
miRNA:   3'- gaUGCaCGC--GGACCG-CGUGCagCACG- -5'
25563 3' -57.7 NC_005337.1 + 50458 0.66 0.837433
Target:  5'- -cGCGUGuUGuCCUGGCGCGCccgaCGggugGCg -3'
miRNA:   3'- gaUGCAC-GC-GGACCGCGUGca--GCa---CG- -5'
25563 3' -57.7 NC_005337.1 + 100364 0.66 0.837433
Target:  5'- -cGCGggGCGCCUGaaguCGC-CGccuUCGUGCa -3'
miRNA:   3'- gaUGCa-CGCGGACc---GCGuGC---AGCACG- -5'
25563 3' -57.7 NC_005337.1 + 6211 0.66 0.837433
Target:  5'- -gGCGUGCacCCUguccaggagGGCGUugGgcaCGUGCa -3'
miRNA:   3'- gaUGCACGc-GGA---------CCGCGugCa--GCACG- -5'
25563 3' -57.7 NC_005337.1 + 106543 0.66 0.837433
Target:  5'- aCUACGUcguGCGCaaGaGCGCGCugcgggagaUCGUGCa -3'
miRNA:   3'- -GAUGCA---CGCGgaC-CGCGUGc--------AGCACG- -5'
25563 3' -57.7 NC_005337.1 + 100652 0.66 0.837433
Target:  5'- aUACGUGgGCCUgaaggacccGGCGUccGCGaCgGUGCu -3'
miRNA:   3'- gAUGCACgCGGA---------CCGCG--UGCaG-CACG- -5'
25563 3' -57.7 NC_005337.1 + 30038 0.66 0.837433
Target:  5'- --cCGUGCccuucuGgCUGGUGCGCGUgGUGa -3'
miRNA:   3'- gauGCACG------CgGACCGCGUGCAgCACg -5'
25563 3' -57.7 NC_005337.1 + 109389 0.66 0.836617
Target:  5'- -cGCGcGgGUCUGGCGUgccguccacagacACGgCGUGCg -3'
miRNA:   3'- gaUGCaCgCGGACCGCG-------------UGCaGCACG- -5'
25563 3' -57.7 NC_005337.1 + 25436 0.66 0.836617
Target:  5'- -gGCGUGuCGCCcGcGCGCuucggcaccguggACG-CGUGCg -3'
miRNA:   3'- gaUGCAC-GCGGaC-CGCG-------------UGCaGCACG- -5'
25563 3' -57.7 NC_005337.1 + 76960 0.66 0.829189
Target:  5'- -cGCG-GCGCUUGGCcGCGCGguuccgagagCG-GCg -3'
miRNA:   3'- gaUGCaCGCGGACCG-CGUGCa---------GCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.