miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25563 3' -57.7 NC_005337.1 + 50117 0.66 0.803432
Target:  5'- -cACGgGCGCucgCUGGCGCGCaUC-UGCg -3'
miRNA:   3'- gaUGCaCGCG---GACCGCGUGcAGcACG- -5'
25563 3' -57.7 NC_005337.1 + 110097 0.66 0.82077
Target:  5'- -aACG-GCGCgaGGCuGCGCGUCcauuacUGCg -3'
miRNA:   3'- gaUGCaCGCGgaCCG-CGUGCAGc-----ACG- -5'
25563 3' -57.7 NC_005337.1 + 109389 0.66 0.836617
Target:  5'- -cGCGcGgGUCUGGCGUgccguccacagacACGgCGUGCg -3'
miRNA:   3'- gaUGCaCgCGGACCGCG-------------UGCaGCACG- -5'
25563 3' -57.7 NC_005337.1 + 3293 0.66 0.812181
Target:  5'- -gGCGUcGUGUCguaGCGCGCGUUGcGCa -3'
miRNA:   3'- gaUGCA-CGCGGac-CGCGUGCAGCaCG- -5'
25563 3' -57.7 NC_005337.1 + 54012 0.66 0.82077
Target:  5'- -cGCGUcGCGCac-GCGCACGUCGc-- -3'
miRNA:   3'- gaUGCA-CGCGgacCGCGUGCAGCacg -5'
25563 3' -57.7 NC_005337.1 + 1643 0.66 0.809573
Target:  5'- aUGCGcGCGCCcgcggcgacgagcuUGGcCGCcgccGCGUCGUuGCg -3'
miRNA:   3'- gAUGCaCGCGG--------------ACC-GCG----UGCAGCA-CG- -5'
25563 3' -57.7 NC_005337.1 + 126033 0.66 0.803432
Target:  5'- gUGCGUGUGUCUcauGCGCGCcg-GUGCg -3'
miRNA:   3'- gAUGCACGCGGAc--CGCGUGcagCACG- -5'
25563 3' -57.7 NC_005337.1 + 99151 0.66 0.82077
Target:  5'- ---aGUGCGCCgcacugGGCGUccGCGcCGcGCg -3'
miRNA:   3'- gaugCACGCGGa-----CCGCG--UGCaGCaCG- -5'
25563 3' -57.7 NC_005337.1 + 131920 0.66 0.812181
Target:  5'- -----aGCaCCUGGCGCGgaUCGUGCg -3'
miRNA:   3'- gaugcaCGcGGACCGCGUgcAGCACG- -5'
25563 3' -57.7 NC_005337.1 + 76960 0.66 0.829189
Target:  5'- -cGCG-GCGCUUGGCcGCGCGguuccgagagCG-GCg -3'
miRNA:   3'- gaUGCaCGCGGACCG-CGUGCa---------GCaCG- -5'
25563 3' -57.7 NC_005337.1 + 6211 0.66 0.837433
Target:  5'- -gGCGUGCacCCUguccaggagGGCGUugGgcaCGUGCa -3'
miRNA:   3'- gaUGCACGc-GGA---------CCGCGugCa--GCACG- -5'
25563 3' -57.7 NC_005337.1 + 68393 0.66 0.82077
Target:  5'- -gACGUcCGCCcuGCGCGCGUgCGUGg -3'
miRNA:   3'- gaUGCAcGCGGacCGCGUGCA-GCACg -5'
25563 3' -57.7 NC_005337.1 + 130137 0.66 0.829189
Target:  5'- gUACGUggucgcGCGCgCUGGCGCuCG-CGcGCu -3'
miRNA:   3'- gAUGCA------CGCG-GACCGCGuGCaGCaCG- -5'
25563 3' -57.7 NC_005337.1 + 122187 0.66 0.82077
Target:  5'- -aGCGUGCccgcgccucaucGCCgcgGGCGCGgacgUGUCG-GCg -3'
miRNA:   3'- gaUGCACG------------CGGa--CCGCGU----GCAGCaCG- -5'
25563 3' -57.7 NC_005337.1 + 86411 0.66 0.845492
Target:  5'- uCUGCGUcCGCC--GCGCcCGaCGUGCa -3'
miRNA:   3'- -GAUGCAcGCGGacCGCGuGCaGCACG- -5'
25563 3' -57.7 NC_005337.1 + 97161 0.66 0.812181
Target:  5'- cCUACGacgGCGCCUcGGCGCugcuGCGcucCG-GCg -3'
miRNA:   3'- -GAUGCa--CGCGGA-CCGCG----UGCa--GCaCG- -5'
25563 3' -57.7 NC_005337.1 + 60877 0.66 0.812181
Target:  5'- -gACGcGCGUCcGGCGUuuCGUCGgGCg -3'
miRNA:   3'- gaUGCaCGCGGaCCGCGu-GCAGCaCG- -5'
25563 3' -57.7 NC_005337.1 + 80672 0.66 0.803432
Target:  5'- uCUGCGcgGCGCgCUuccGCGCGCGcaUGUGCg -3'
miRNA:   3'- -GAUGCa-CGCG-GAc--CGCGUGCa-GCACG- -5'
25563 3' -57.7 NC_005337.1 + 15495 0.66 0.829189
Target:  5'- -gACG-GCGCCgccgccGGCGUcaucuaggACGUCGcGCa -3'
miRNA:   3'- gaUGCaCGCGGa-----CCGCG--------UGCAGCaCG- -5'
25563 3' -57.7 NC_005337.1 + 80625 0.66 0.812181
Target:  5'- -cGCGaagcGCGCgUGGCGgAagacguaGUCGUGCc -3'
miRNA:   3'- gaUGCa---CGCGgACCGCgUg------CAGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.