miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25563 3' -57.7 NC_005337.1 + 1433 0.68 0.718855
Target:  5'- uCUGCGaGCGCggcGGCGC-CGagGUGCg -3'
miRNA:   3'- -GAUGCaCGCGga-CCGCGuGCagCACG- -5'
25563 3' -57.7 NC_005337.1 + 1643 0.66 0.809573
Target:  5'- aUGCGcGCGCCcgcggcgacgagcuUGGcCGCcgccGCGUCGUuGCg -3'
miRNA:   3'- gAUGCaCGCGG--------------ACC-GCG----UGCAGCA-CG- -5'
25563 3' -57.7 NC_005337.1 + 2097 0.67 0.785484
Target:  5'- -gGCGcGCGCCgcgagcccGGUcagGCACG-CGUGCa -3'
miRNA:   3'- gaUGCaCGCGGa-------CCG---CGUGCaGCACG- -5'
25563 3' -57.7 NC_005337.1 + 2175 0.66 0.82077
Target:  5'- -cACG-GCGCCgacGCGCACGgCGcagGCg -3'
miRNA:   3'- gaUGCaCGCGGac-CGCGUGCaGCa--CG- -5'
25563 3' -57.7 NC_005337.1 + 2993 0.66 0.842291
Target:  5'- -cGCGccUGCGaCUGGCGgACGggcuccggcagcgCGUGCg -3'
miRNA:   3'- gaUGC--ACGCgGACCGCgUGCa------------GCACG- -5'
25563 3' -57.7 NC_005337.1 + 3293 0.66 0.812181
Target:  5'- -gGCGUcGUGUCguaGCGCGCGUUGcGCa -3'
miRNA:   3'- gaUGCA-CGCGGac-CGCGUGCAGCaCG- -5'
25563 3' -57.7 NC_005337.1 + 6211 0.66 0.837433
Target:  5'- -gGCGUGCacCCUguccaggagGGCGUugGgcaCGUGCa -3'
miRNA:   3'- gaUGCACGc-GGA---------CCGCGugCa--GCACG- -5'
25563 3' -57.7 NC_005337.1 + 6881 0.67 0.79453
Target:  5'- -aGCGUGCGCCcguccaUGuCGCGCG-CGcGCg -3'
miRNA:   3'- gaUGCACGCGG------ACcGCGUGCaGCaCG- -5'
25563 3' -57.7 NC_005337.1 + 9355 0.69 0.658771
Target:  5'- -cGCGU-CGCCUGGaCGCGCG-C-UGCg -3'
miRNA:   3'- gaUGCAcGCGGACC-GCGUGCaGcACG- -5'
25563 3' -57.7 NC_005337.1 + 9730 0.67 0.785484
Target:  5'- -aGCGgggagGagaGCCUGaagcaGCGCGCGUCGgccgGCg -3'
miRNA:   3'- gaUGCa----Cg--CGGAC-----CGCGUGCAGCa---CG- -5'
25563 3' -57.7 NC_005337.1 + 10000 0.66 0.845492
Target:  5'- uUACcUG-GCC-GGCGCcgccguCGUCGUGCu -3'
miRNA:   3'- gAUGcACgCGGaCCGCGu-----GCAGCACG- -5'
25563 3' -57.7 NC_005337.1 + 10275 0.66 0.812181
Target:  5'- -gGCGgcgGCGCguucagcaUGGCGCGCGcaUCG-GCg -3'
miRNA:   3'- gaUGCa--CGCGg-------ACCGCGUGC--AGCaCG- -5'
25563 3' -57.7 NC_005337.1 + 10420 0.77 0.254559
Target:  5'- gCUGCGcccaggagGaCGCCUGcgcggcgguGCGCGCGUCGUGCg -3'
miRNA:   3'- -GAUGCa-------C-GCGGAC---------CGCGUGCAGCACG- -5'
25563 3' -57.7 NC_005337.1 + 11516 0.67 0.782743
Target:  5'- --uCGUGCGCCgGGCaGCGCaggguggccgccagGUCGUccGCg -3'
miRNA:   3'- gauGCACGCGGaCCG-CGUG--------------CAGCA--CG- -5'
25563 3' -57.7 NC_005337.1 + 13926 0.71 0.528103
Target:  5'- --uCGUGgGCg-GGCGCAgcccCGUCGUGCu -3'
miRNA:   3'- gauGCACgCGgaCCGCGU----GCAGCACG- -5'
25563 3' -57.7 NC_005337.1 + 14530 0.67 0.79453
Target:  5'- -cGCGUGCuG-CUGGCGCACcauGuccgcgaguuccUCGUGCg -3'
miRNA:   3'- gaUGCACG-CgGACCGCGUG---C------------AGCACG- -5'
25563 3' -57.7 NC_005337.1 + 15251 0.71 0.547797
Target:  5'- -gGCG-GCGCC-GGCGCcgaACGUUGUGg -3'
miRNA:   3'- gaUGCaCGCGGaCCGCG---UGCAGCACg -5'
25563 3' -57.7 NC_005337.1 + 15495 0.66 0.829189
Target:  5'- -gACG-GCGCCgccgccGGCGUcaucuaggACGUCGcGCa -3'
miRNA:   3'- gaUGCaCGCGGa-----CCGCG--------UGCAGCaCG- -5'
25563 3' -57.7 NC_005337.1 + 16747 0.72 0.470786
Target:  5'- -gAUGUGCGCggucacGGCGCGCcggcugauGUCGUGCa -3'
miRNA:   3'- gaUGCACGCGga----CCGCGUG--------CAGCACG- -5'
25563 3' -57.7 NC_005337.1 + 17023 0.68 0.738392
Target:  5'- uCUGCGggccGCGCgaaGGCGCACGgcagCG-GCa -3'
miRNA:   3'- -GAUGCa---CGCGga-CCGCGUGCa---GCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.