miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25563 5' -49.4 NC_005337.1 + 13765 0.65 0.99837
Target:  5'- cGCGCccGAACGcGGCgagGggcgccaggucguAGCUCGUGu -3'
miRNA:   3'- -CGCGuaCUUGCaCUGa--U-------------UCGAGCACc -5'
25563 5' -49.4 NC_005337.1 + 21913 0.66 0.997931
Target:  5'- cGCGCuucAUGGAgGUGGCcgcgcgcuccgccGAGCUCGcGGa -3'
miRNA:   3'- -CGCG---UACUUgCACUGa------------UUCGAGCaCC- -5'
25563 5' -49.4 NC_005337.1 + 117713 0.66 0.997698
Target:  5'- -aGCGUGAACGUGAagacgguGCUgCG-GGa -3'
miRNA:   3'- cgCGUACUUGCACUgauu---CGA-GCaCC- -5'
25563 5' -49.4 NC_005337.1 + 90783 0.66 0.997698
Target:  5'- uGCGaCAgcccGAUGUGGUUGGGCUgGUGGg -3'
miRNA:   3'- -CGC-GUac--UUGCACUGAUUCGAgCACC- -5'
25563 5' -49.4 NC_005337.1 + 75650 0.66 0.997698
Target:  5'- gGCGCGUccgGCGUcGACUucAAGUgCGUGGu -3'
miRNA:   3'- -CGCGUAcu-UGCA-CUGA--UUCGaGCACC- -5'
25563 5' -49.4 NC_005337.1 + 47386 0.66 0.997698
Target:  5'- cCGCGUGGGCGUGuACcGAGUcaaCGUGu -3'
miRNA:   3'- cGCGUACUUGCAC-UGaUUCGa--GCACc -5'
25563 5' -49.4 NC_005337.1 + 123368 0.66 0.997698
Target:  5'- cGCGCA-GAGCGUgcgcGACgcGGCgaUCGUGc -3'
miRNA:   3'- -CGCGUaCUUGCA----CUGauUCG--AGCACc -5'
25563 5' -49.4 NC_005337.1 + 39089 0.66 0.99726
Target:  5'- gGCGacauCGUGGucgcCGUGGCgcggAAGCUCGcGGg -3'
miRNA:   3'- -CGC----GUACUu---GCACUGa---UUCGAGCaCC- -5'
25563 5' -49.4 NC_005337.1 + 61819 0.66 0.99726
Target:  5'- cGCGCAUGGcgGCGgcgaGCUuGAGCUgGUGc -3'
miRNA:   3'- -CGCGUACU--UGCac--UGA-UUCGAgCACc -5'
25563 5' -49.4 NC_005337.1 + 130317 0.66 0.99726
Target:  5'- uGCGUacGUGGACGUGuacgagcgcuGCUGcAGCUCGa-- -3'
miRNA:   3'- -CGCG--UACUUGCAC----------UGAU-UCGAGCacc -5'
25563 5' -49.4 NC_005337.1 + 90166 0.66 0.996755
Target:  5'- cGgGCAUGAagcaguccACG-GACaUAAGCUCGUc- -3'
miRNA:   3'- -CgCGUACU--------UGCaCUG-AUUCGAGCAcc -5'
25563 5' -49.4 NC_005337.1 + 73415 0.66 0.996755
Target:  5'- aGCuCGUGGACGUGGu---GCUCG-GGg -3'
miRNA:   3'- -CGcGUACUUGCACUgauuCGAGCaCC- -5'
25563 5' -49.4 NC_005337.1 + 63402 0.66 0.996755
Target:  5'- aGCGCGcUGGACaUGGCgc-GCUCGUa- -3'
miRNA:   3'- -CGCGU-ACUUGcACUGauuCGAGCAcc -5'
25563 5' -49.4 NC_005337.1 + 38799 0.66 0.996755
Target:  5'- aGUGCAUGGAC-UGGCUGcGCaCG-GGg -3'
miRNA:   3'- -CGCGUACUUGcACUGAUuCGaGCaCC- -5'
25563 5' -49.4 NC_005337.1 + 56206 0.66 0.996755
Target:  5'- cGCGCuaccugcaGGACGUGGCggagGGGCggaUCGUGc -3'
miRNA:   3'- -CGCGua------CUUGCACUGa---UUCG---AGCACc -5'
25563 5' -49.4 NC_005337.1 + 59014 0.67 0.996176
Target:  5'- aGCGcCGUGcgguCGUGGCgcccGCUgGUGGa -3'
miRNA:   3'- -CGC-GUACuu--GCACUGauu-CGAgCACC- -5'
25563 5' -49.4 NC_005337.1 + 78872 0.67 0.995514
Target:  5'- uGCGCGUGAGC-UGACgcaggcGCUUGUu- -3'
miRNA:   3'- -CGCGUACUUGcACUGauu---CGAGCAcc -5'
25563 5' -49.4 NC_005337.1 + 115146 0.67 0.994762
Target:  5'- cGCGCGUGGcggaggccuGCGUccGACagAAGCucccugacaUCGUGGa -3'
miRNA:   3'- -CGCGUACU---------UGCA--CUGa-UUCG---------AGCACC- -5'
25563 5' -49.4 NC_005337.1 + 99423 0.67 0.994762
Target:  5'- gGCGgGU--GCGUG-CUGAGCcgcggCGUGGg -3'
miRNA:   3'- -CGCgUAcuUGCACuGAUUCGa----GCACC- -5'
25563 5' -49.4 NC_005337.1 + 60280 0.67 0.994762
Target:  5'- gGCGCggGggUGgGAgUGGGCUUG-GGg -3'
miRNA:   3'- -CGCGuaCuuGCaCUgAUUCGAGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.