miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25563 5' -49.4 NC_005337.1 + 100836 1.15 0.005313
Target:  5'- cGCGCAUGAACGUGACUAAGCUCGUGGa -3'
miRNA:   3'- -CGCGUACUUGCACUGAUUCGAGCACC- -5'
25563 5' -49.4 NC_005337.1 + 72475 0.83 0.407316
Target:  5'- uGCGCGUGGACGUGgacuACUucgccaaggugaacGAGUUCGUGGa -3'
miRNA:   3'- -CGCGUACUUGCAC----UGA--------------UUCGAGCACC- -5'
25563 5' -49.4 NC_005337.1 + 122245 0.82 0.447214
Target:  5'- cGgGCGUGAACGUGACcgucCUCGUGGa -3'
miRNA:   3'- -CgCGUACUUGCACUGauucGAGCACC- -5'
25563 5' -49.4 NC_005337.1 + 21490 0.8 0.537066
Target:  5'- uGCGCcgccACGUGGCUGAGCUCGcGGa -3'
miRNA:   3'- -CGCGuacuUGCACUGAUUCGAGCaCC- -5'
25563 5' -49.4 NC_005337.1 + 105486 0.78 0.632355
Target:  5'- gGCGCAUGAGCaaGAUccggGAGUUCGUGGc -3'
miRNA:   3'- -CGCGUACUUGcaCUGa---UUCGAGCACC- -5'
25563 5' -49.4 NC_005337.1 + 22371 0.76 0.737746
Target:  5'- gGCGCGUGAACGccaacacGCuUAAGCUCGUGu -3'
miRNA:   3'- -CGCGUACUUGCac-----UG-AUUCGAGCACc -5'
25563 5' -49.4 NC_005337.1 + 100057 0.75 0.796817
Target:  5'- uGCGCGUGGucgACGUGGCcAAGCUgGacUGGa -3'
miRNA:   3'- -CGCGUACU---UGCACUGaUUCGAgC--ACC- -5'
25563 5' -49.4 NC_005337.1 + 66310 0.75 0.812585
Target:  5'- cCGCGUGAGCGccgcggucgcgggcUGGCgacacguGCUCGUGGa -3'
miRNA:   3'- cGCGUACUUGC--------------ACUGauu----CGAGCACC- -5'
25563 5' -49.4 NC_005337.1 + 43502 0.74 0.841677
Target:  5'- cGUGCAUGGACGagGACgaguuccgcAGCUcCGUGGa -3'
miRNA:   3'- -CGCGUACUUGCa-CUGau-------UCGA-GCACC- -5'
25563 5' -49.4 NC_005337.1 + 42845 0.74 0.841677
Target:  5'- uGCGCGUGGugGUGACggacGCcugCGUGa -3'
miRNA:   3'- -CGCGUACUugCACUGauu-CGa--GCACc -5'
25563 5' -49.4 NC_005337.1 + 24616 0.73 0.881358
Target:  5'- gGCGCGggcacGGAgGUGACggaaAAGCUgGUGGa -3'
miRNA:   3'- -CGCGUa----CUUgCACUGa---UUCGAgCACC- -5'
25563 5' -49.4 NC_005337.1 + 41603 0.73 0.895579
Target:  5'- aGgGCGUGGuCGUGGCgaaggAGGC-CGUGGu -3'
miRNA:   3'- -CgCGUACUuGCACUGa----UUCGaGCACC- -5'
25563 5' -49.4 NC_005337.1 + 66140 0.71 0.937308
Target:  5'- aGCGCGUGGACGguccguuCUccgccacgucaGAGCUgGUGGa -3'
miRNA:   3'- -CGCGUACUUGCacu----GA-----------UUCGAgCACC- -5'
25563 5' -49.4 NC_005337.1 + 116001 0.71 0.937308
Target:  5'- cGCGC-UGGGCGUGcgGCUcaccGAGCagGUGGa -3'
miRNA:   3'- -CGCGuACUUGCAC--UGA----UUCGagCACC- -5'
25563 5' -49.4 NC_005337.1 + 101520 0.71 0.955454
Target:  5'- cGCGCggcuggaggccGUGGACGUGACcgccGCcagCGUGGa -3'
miRNA:   3'- -CGCG-----------UACUUGCACUGauu-CGa--GCACC- -5'
25563 5' -49.4 NC_005337.1 + 69241 0.71 0.955454
Target:  5'- cGCGCcUGGACGUGccGgUGAcGCUgGUGGu -3'
miRNA:   3'- -CGCGuACUUGCAC--UgAUU-CGAgCACC- -5'
25563 5' -49.4 NC_005337.1 + 59740 0.7 0.959363
Target:  5'- cGCGCGgcgGAGCGcGuCUccgcGAGCUCgGUGGa -3'
miRNA:   3'- -CGCGUa--CUUGCaCuGA----UUCGAG-CACC- -5'
25563 5' -49.4 NC_005337.1 + 131673 0.7 0.959363
Target:  5'- cGCGC-UGAACGacuucGACUucGCgcgCGUGGc -3'
miRNA:   3'- -CGCGuACUUGCa----CUGAuuCGa--GCACC- -5'
25563 5' -49.4 NC_005337.1 + 122378 0.7 0.963028
Target:  5'- cGCGCAUGuGCGUGcGC-GAGgUCGUGc -3'
miRNA:   3'- -CGCGUACuUGCAC-UGaUUCgAGCACc -5'
25563 5' -49.4 NC_005337.1 + 83257 0.7 0.966457
Target:  5'- -aGCcgGAGCcUGACUGgcGGCUCGaGGg -3'
miRNA:   3'- cgCGuaCUUGcACUGAU--UCGAGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.