miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25566 3' -55.7 NC_005337.1 + 29544 0.66 0.905019
Target:  5'- cGGCGGCCGUGcacCCacUCGCUGcUCa -3'
miRNA:   3'- aCCGCUGGUACua-GGacAGCGGCuAG- -5'
25566 3' -55.7 NC_005337.1 + 23078 0.66 0.905019
Target:  5'- cGGCGGCCGUGcccggcAUCgUG-CGCgCGGUg -3'
miRNA:   3'- aCCGCUGGUAC------UAGgACaGCG-GCUAg -5'
25566 3' -55.7 NC_005337.1 + 56232 0.66 0.905019
Target:  5'- gGGCgGAUCGUGc-CCaUGUCGCCGGc- -3'
miRNA:   3'- aCCG-CUGGUACuaGG-ACAGCGGCUag -5'
25566 3' -55.7 NC_005337.1 + 127586 0.66 0.905019
Target:  5'- gGGCGcaGCCGUGGac--GUCGCCGAgUCg -3'
miRNA:   3'- aCCGC--UGGUACUaggaCAGCGGCU-AG- -5'
25566 3' -55.7 NC_005337.1 + 44403 0.66 0.898604
Target:  5'- gUGGCGGaCAUGAUCgUGggucUGCCGGa- -3'
miRNA:   3'- -ACCGCUgGUACUAGgACa---GCGGCUag -5'
25566 3' -55.7 NC_005337.1 + 130468 0.66 0.898604
Target:  5'- cUGGUgcuGAgCAaGGUgCCcGUCGCCGAUCu -3'
miRNA:   3'- -ACCG---CUgGUaCUA-GGaCAGCGGCUAG- -5'
25566 3' -55.7 NC_005337.1 + 95117 0.66 0.898604
Target:  5'- cGGCGAUCAUG-UCCg--CGCgCGAg- -3'
miRNA:   3'- aCCGCUGGUACuAGGacaGCG-GCUag -5'
25566 3' -55.7 NC_005337.1 + 33411 0.66 0.891953
Target:  5'- cUGGCGGCCgccguggaugGUGcgCUUGaucUCGCCGuaGUCg -3'
miRNA:   3'- -ACCGCUGG----------UACuaGGAC---AGCGGC--UAG- -5'
25566 3' -55.7 NC_005337.1 + 50844 0.66 0.891953
Target:  5'- aUGGCGugCGgcGUCUgcaacgccaUGUCGCUGAUa -3'
miRNA:   3'- -ACCGCugGUacUAGG---------ACAGCGGCUAg -5'
25566 3' -55.7 NC_005337.1 + 71057 0.66 0.891953
Target:  5'- gUGGCGAaCAUGcaCCUG-CGCCGcgCc -3'
miRNA:   3'- -ACCGCUgGUACuaGGACaGCGGCuaG- -5'
25566 3' -55.7 NC_005337.1 + 127700 0.66 0.891953
Target:  5'- cGGUGGCCGcgaccgGGUUCUG-CGCCGuagCg -3'
miRNA:   3'- aCCGCUGGUa-----CUAGGACaGCGGCua-G- -5'
25566 3' -55.7 NC_005337.1 + 31441 0.66 0.891953
Target:  5'- cGGCccGACCAUGAcgcgcgUCUUGUUGCCc--- -3'
miRNA:   3'- aCCG--CUGGUACU------AGGACAGCGGcuag -5'
25566 3' -55.7 NC_005337.1 + 100968 0.66 0.887849
Target:  5'- aGGCGcACCAUGAUCgucuucuucgucuggCUcGUCGCCa--- -3'
miRNA:   3'- aCCGC-UGGUACUAG---------------GA-CAGCGGcuag -5'
25566 3' -55.7 NC_005337.1 + 130423 0.66 0.885067
Target:  5'- cGGUgccaGACCAUcGAcauccUCCUGUCgaGCCGGUUc -3'
miRNA:   3'- aCCG----CUGGUA-CU-----AGGACAG--CGGCUAG- -5'
25566 3' -55.7 NC_005337.1 + 132572 0.66 0.885067
Target:  5'- cGGUGGCCGUG-UCgCUGUUGCgaCGcgCg -3'
miRNA:   3'- aCCGCUGGUACuAG-GACAGCG--GCuaG- -5'
25566 3' -55.7 NC_005337.1 + 110949 0.66 0.877953
Target:  5'- gGGCGACCGcGucugCgUGUCGCCcauAUCg -3'
miRNA:   3'- aCCGCUGGUaCua--GgACAGCGGc--UAG- -5'
25566 3' -55.7 NC_005337.1 + 46375 0.66 0.877229
Target:  5'- aGGCGcgccagcgcgucaGCCA-GGUCCUGcCGCgaGGUCa -3'
miRNA:   3'- aCCGC-------------UGGUaCUAGGACaGCGg-CUAG- -5'
25566 3' -55.7 NC_005337.1 + 85447 0.66 0.870614
Target:  5'- ---gGACCuUGAUCUUGUUGUgGAUCa -3'
miRNA:   3'- accgCUGGuACUAGGACAGCGgCUAG- -5'
25566 3' -55.7 NC_005337.1 + 18667 0.67 0.863056
Target:  5'- cGGCGGgCG-GAUCCgaggGCCGGUCg -3'
miRNA:   3'- aCCGCUgGUaCUAGGacagCGGCUAG- -5'
25566 3' -55.7 NC_005337.1 + 72260 0.67 0.858418
Target:  5'- aUGGUGAUCAagaacaagacgcgcgUGcccuUCCUgcugcucucugcGUCGCCGAUCa -3'
miRNA:   3'- -ACCGCUGGU---------------ACu---AGGA------------CAGCGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.