miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25567 5' -58.8 NC_005337.1 + 110503 0.66 0.793838
Target:  5'- gCUCGAC-GUGGCgc--UCGCGCGUg -3'
miRNA:   3'- gGGGCUGuCGCCGaagaAGCGCGCGu -5'
25567 5' -58.8 NC_005337.1 + 845 0.66 0.793838
Target:  5'- gCUCGACgaaGGCGGCgggCagCGCGgGCGc -3'
miRNA:   3'- gGGGCUG---UCGCCGaa-GaaGCGCgCGU- -5'
25567 5' -58.8 NC_005337.1 + 97985 0.66 0.793838
Target:  5'- uCCgCGACAccGUGGCcgCgUUCGCGCaGCGg -3'
miRNA:   3'- -GGgGCUGU--CGCCGaaG-AAGCGCG-CGU- -5'
25567 5' -58.8 NC_005337.1 + 86644 0.66 0.793838
Target:  5'- aCCCGGCGGUGGCg----CGCaGaCGCu -3'
miRNA:   3'- gGGGCUGUCGCCGaagaaGCG-C-GCGu -5'
25567 5' -58.8 NC_005337.1 + 845 0.66 0.793838
Target:  5'- gCUCGACgaaGGCGGCgggCagCGCGgGCGc -3'
miRNA:   3'- gGGGCUG---UCGCCGaa-GaaGCGCgCGU- -5'
25567 5' -58.8 NC_005337.1 + 3015 0.66 0.793838
Target:  5'- gCUCCGGCAGCGcGUgcgCgccgaUGUGCGCGa -3'
miRNA:   3'- -GGGGCUGUCGC-CGaa-Gaa---GCGCGCGU- -5'
25567 5' -58.8 NC_005337.1 + 120431 0.66 0.78485
Target:  5'- -gCCGGCAgGCGGCggac-UGCGCGCc -3'
miRNA:   3'- ggGGCUGU-CGCCGaagaaGCGCGCGu -5'
25567 5' -58.8 NC_005337.1 + 99680 0.66 0.78485
Target:  5'- gCCCG-UGGCGuGCgacagCUUCGaCGCGCu -3'
miRNA:   3'- gGGGCuGUCGC-CGaa---GAAGC-GCGCGu -5'
25567 5' -58.8 NC_005337.1 + 120445 0.66 0.783944
Target:  5'- cCCCCGagucccuGCGG-GGCgcgcUCgagCGCGCGCu -3'
miRNA:   3'- -GGGGC-------UGUCgCCGa---AGaa-GCGCGCGu -5'
25567 5' -58.8 NC_005337.1 + 6009 0.66 0.783036
Target:  5'- aCCgCCGcguGCAGCGGCgUCcgcccagaguugUCGCGgGCGu -3'
miRNA:   3'- -GG-GGC---UGUCGCCGaAGa-----------AGCGCgCGU- -5'
25567 5' -58.8 NC_005337.1 + 41934 0.66 0.775729
Target:  5'- uCCUCGucguCGGaCGGCUggaCggUGCGCGCGa -3'
miRNA:   3'- -GGGGCu---GUC-GCCGAa--GaaGCGCGCGU- -5'
25567 5' -58.8 NC_005337.1 + 42399 0.66 0.775729
Target:  5'- gCCgCGGCGcGCGGCcUCgcUGUGCGCc -3'
miRNA:   3'- -GGgGCUGU-CGCCGaAGaaGCGCGCGu -5'
25567 5' -58.8 NC_005337.1 + 36439 0.66 0.775729
Target:  5'- aCCCGGCuGCaGCUg---CGCGgGCGg -3'
miRNA:   3'- gGGGCUGuCGcCGAagaaGCGCgCGU- -5'
25567 5' -58.8 NC_005337.1 + 43068 0.66 0.775729
Target:  5'- aCCaCCGGCGGCGcGCccgUCcgcaUCGCgGCGCc -3'
miRNA:   3'- -GG-GGCUGUCGC-CGa--AGa---AGCG-CGCGu -5'
25567 5' -58.8 NC_005337.1 + 23922 0.66 0.766484
Target:  5'- gCCCGcGCGcccGCGGCagg--CGCGCGCGa -3'
miRNA:   3'- gGGGC-UGU---CGCCGaagaaGCGCGCGU- -5'
25567 5' -58.8 NC_005337.1 + 87777 0.66 0.766484
Target:  5'- aCUCCGGCGccGCGGUgUCggcCGCGCGg- -3'
miRNA:   3'- -GGGGCUGU--CGCCGaAGaa-GCGCGCgu -5'
25567 5' -58.8 NC_005337.1 + 57145 0.66 0.766484
Target:  5'- gCUCGGCGGCGGCacgcccgUCggaaucaugUC-CGCGCAg -3'
miRNA:   3'- gGGGCUGUCGCCGa------AGa--------AGcGCGCGU- -5'
25567 5' -58.8 NC_005337.1 + 89856 0.66 0.766484
Target:  5'- gCCUCGA--GCuGCUUCUccgagCGCGCGCu -3'
miRNA:   3'- -GGGGCUguCGcCGAAGAa----GCGCGCGu -5'
25567 5' -58.8 NC_005337.1 + 128686 0.66 0.763688
Target:  5'- cCCCCGccggGCAcgcgcgcuggcgacGCGGCUgg--CGCGCGUg -3'
miRNA:   3'- -GGGGC----UGU--------------CGCCGAagaaGCGCGCGu -5'
25567 5' -58.8 NC_005337.1 + 38246 0.66 0.757123
Target:  5'- gCCUGACGagacGCGGCgcgCgUUCGCGCucGCGg -3'
miRNA:   3'- gGGGCUGU----CGCCGaa-G-AAGCGCG--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.