miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 53599 0.66 0.906997
Target:  5'- -cAUgCG-CGCGCggaagCGCGCCG-CGCAg -3'
miRNA:   3'- cuUAgGCaGUGCGa----GUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 65735 0.66 0.906997
Target:  5'- cGGcgCCGUCacuagcgcggcACGCUCAgaGCCGagCGCGg -3'
miRNA:   3'- -CUuaGGCAG-----------UGCGAGUg-CGGCa-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 131558 0.66 0.906997
Target:  5'- gGAcgUCGUCGCGCUCGUGCUccucCGCGu -3'
miRNA:   3'- -CUuaGGCAGUGCGAGUGCGGca--GCGU- -5'
25568 3' -55.9 NC_005337.1 + 98716 0.66 0.906997
Target:  5'- -cAUCCGcUCGCGCg-GCGCCcugCGCGu -3'
miRNA:   3'- cuUAGGC-AGUGCGagUGCGGca-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 28241 0.66 0.906997
Target:  5'- cGAAacgCCGUCGCGCggcaccaCGCGCaCGUgCGUg -3'
miRNA:   3'- -CUUa--GGCAGUGCGa------GUGCG-GCA-GCGu -5'
25568 3' -55.9 NC_005337.1 + 67971 0.66 0.906997
Target:  5'- ---aCCGcgGCGCUCACGCgGUC-CAg -3'
miRNA:   3'- cuuaGGCagUGCGAGUGCGgCAGcGU- -5'
25568 3' -55.9 NC_005337.1 + 6248 0.66 0.900694
Target:  5'- cGAGUCagCGUCgcugACGCUgGCGCCGgCGUc -3'
miRNA:   3'- -CUUAG--GCAG----UGCGAgUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 97771 0.66 0.900694
Target:  5'- aGGAU-CGUCGCGCcgaGCGCCGcggcCGCGg -3'
miRNA:   3'- -CUUAgGCAGUGCGag-UGCGGCa---GCGU- -5'
25568 3' -55.9 NC_005337.1 + 133648 0.66 0.900694
Target:  5'- gGAcgUCGcCGCGCUgGaCGCCGaCGCGg -3'
miRNA:   3'- -CUuaGGCaGUGCGAgU-GCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 133648 0.66 0.900694
Target:  5'- gGAcgUCGcCGCGCUgGaCGCCGaCGCGg -3'
miRNA:   3'- -CUuaGGCaGUGCGAgU-GCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 121492 0.66 0.900694
Target:  5'- -cAUCUG-CGgGUUCACGCCGcUGCAc -3'
miRNA:   3'- cuUAGGCaGUgCGAGUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 127452 0.66 0.900694
Target:  5'- gGAAUCCaUCAUGCgCACGCuCGUgGaCAg -3'
miRNA:   3'- -CUUAGGcAGUGCGaGUGCG-GCAgC-GU- -5'
25568 3' -55.9 NC_005337.1 + 12710 0.66 0.900694
Target:  5'- -cGUCCG-CGCGC--GCGCCG-CGCu -3'
miRNA:   3'- cuUAGGCaGUGCGagUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 40240 0.66 0.894156
Target:  5'- -cGUCgGcCGCGC-CGCGCCG-CGCc -3'
miRNA:   3'- cuUAGgCaGUGCGaGUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 101489 0.66 0.894156
Target:  5'- aGGcgCUGcUCGCGCUCAUGCgCGagCGCu -3'
miRNA:   3'- -CUuaGGC-AGUGCGAGUGCG-GCa-GCGu -5'
25568 3' -55.9 NC_005337.1 + 44982 0.66 0.894156
Target:  5'- --cUCCaaCACGCUCGcCGCCGUCc-- -3'
miRNA:   3'- cuuAGGcaGUGCGAGU-GCGGCAGcgu -5'
25568 3' -55.9 NC_005337.1 + 111365 0.66 0.894156
Target:  5'- gGAcgCUGUCGCugaagaGCUCGCgguGCCGcUCGCGc -3'
miRNA:   3'- -CUuaGGCAGUG------CGAGUG---CGGC-AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 38078 0.66 0.894156
Target:  5'- cGggUCCGUgggcgccacCACGCUCAUGUacaUCGUg -3'
miRNA:   3'- -CuuAGGCA---------GUGCGAGUGCGgc-AGCGu -5'
25568 3' -55.9 NC_005337.1 + 102835 0.66 0.894156
Target:  5'- aGAcgCgCGUCAUGgUCGgGCCG-CGCGc -3'
miRNA:   3'- -CUuaG-GCAGUGCgAGUgCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 50943 0.66 0.887386
Target:  5'- ---cCCGggGCGcCUCGCGCCG-CGCc -3'
miRNA:   3'- cuuaGGCagUGC-GAGUGCGGCaGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.