miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 101489 0.66 0.894156
Target:  5'- aGGcgCUGcUCGCGCUCAUGCgCGagCGCu -3'
miRNA:   3'- -CUuaGGC-AGUGCGAGUGCG-GCa-GCGu -5'
25568 3' -55.9 NC_005337.1 + 128365 0.66 0.880388
Target:  5'- ---cCCGcUCGCGCUCGCGaUC-UCGCGa -3'
miRNA:   3'- cuuaGGC-AGUGCGAGUGC-GGcAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 20133 0.66 0.887386
Target:  5'- aGAggUCGgcgaaggCGCGCUcCACGCUGcCGCAg -3'
miRNA:   3'- -CUuaGGCa------GUGCGA-GUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 46454 0.66 0.887386
Target:  5'- cGAUCUG-CGCGCggCGCGCCGgcgaGCu -3'
miRNA:   3'- cUUAGGCaGUGCGa-GUGCGGCag--CGu -5'
25568 3' -55.9 NC_005337.1 + 78137 0.66 0.880388
Target:  5'- ---gCCGcCcCGCUgCACGCCG-CGCAc -3'
miRNA:   3'- cuuaGGCaGuGCGA-GUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 87686 0.66 0.880388
Target:  5'- ---aCCGUCAUGUUCAgGUCGagGCc -3'
miRNA:   3'- cuuaGGCAGUGCGAGUgCGGCagCGu -5'
25568 3' -55.9 NC_005337.1 + 23048 0.66 0.880388
Target:  5'- -cGUUCGUgacgCACGCcgCGCGCCGgaaCGCGg -3'
miRNA:   3'- cuUAGGCA----GUGCGa-GUGCGGCa--GCGU- -5'
25568 3' -55.9 NC_005337.1 + 40240 0.66 0.894156
Target:  5'- -cGUCgGcCGCGC-CGCGCCG-CGCc -3'
miRNA:   3'- cuUAGgCaGUGCGaGUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 121492 0.66 0.900694
Target:  5'- -cAUCUG-CGgGUUCACGCCGcUGCAc -3'
miRNA:   3'- cuUAGGCaGUgCGAGUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 132103 0.66 0.873166
Target:  5'- ---gCCGUgCGCGUcgGCGCCGUgCGCGg -3'
miRNA:   3'- cuuaGGCA-GUGCGagUGCGGCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 80141 0.66 0.873166
Target:  5'- aGAG-CCaugCGCGCggCGCgGCCGUCGCGc -3'
miRNA:   3'- -CUUaGGca-GUGCGa-GUG-CGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 28241 0.66 0.906997
Target:  5'- cGAAacgCCGUCGCGCggcaccaCGCGCaCGUgCGUg -3'
miRNA:   3'- -CUUa--GGCAGUGCGa------GUGCG-GCA-GCGu -5'
25568 3' -55.9 NC_005337.1 + 133648 0.66 0.900694
Target:  5'- gGAcgUCGcCGCGCUgGaCGCCGaCGCGg -3'
miRNA:   3'- -CUuaGGCaGUGCGAgU-GCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 131558 0.66 0.906997
Target:  5'- gGAcgUCGUCGCGCUCGUGCUccucCGCGu -3'
miRNA:   3'- -CUuaGGCAGUGCGAGUGCGGca--GCGU- -5'
25568 3' -55.9 NC_005337.1 + 30705 0.66 0.873166
Target:  5'- ---cCCGUCGCGgaaCUC-CGCCGggaagUCGCAg -3'
miRNA:   3'- cuuaGGCAGUGC---GAGuGCGGC-----AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 50943 0.66 0.887386
Target:  5'- ---cCCGggGCGcCUCGCGCCG-CGCc -3'
miRNA:   3'- cuuaGGCagUGC-GAGUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 56596 0.66 0.887386
Target:  5'- cGAGUUCGUCGacCGCUucCugGCCuUCGCc -3'
miRNA:   3'- -CUUAGGCAGU--GCGA--GugCGGcAGCGu -5'
25568 3' -55.9 NC_005337.1 + 16152 0.66 0.873166
Target:  5'- ----aCGUCgaaguaGCGCUCGCGCCG-CGUu -3'
miRNA:   3'- cuuagGCAG------UGCGAGUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 82565 0.66 0.887386
Target:  5'- cGAUCaucaGCGCgu-CGCCGUCGCAg -3'
miRNA:   3'- cUUAGgcagUGCGaguGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 17036 0.66 0.880388
Target:  5'- --cUgCGUCGCGUUcCGCGCgGUCuGCAc -3'
miRNA:   3'- cuuAgGCAGUGCGA-GUGCGgCAG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.