miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 133648 0.66 0.900694
Target:  5'- gGAcgUCGcCGCGCUgGaCGCCGaCGCGg -3'
miRNA:   3'- -CUuaGGCaGUGCGAgU-GCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 111365 0.66 0.894156
Target:  5'- gGAcgCUGUCGCugaagaGCUCGCgguGCCGcUCGCGc -3'
miRNA:   3'- -CUuaGGCAGUG------CGAGUG---CGGC-AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 17036 0.66 0.880388
Target:  5'- --cUgCGUCGCGUUcCGCGCgGUCuGCAc -3'
miRNA:   3'- cuuAgGCAGUGCGA-GUGCGgCAG-CGU- -5'
25568 3' -55.9 NC_005337.1 + 28241 0.66 0.906997
Target:  5'- cGAAacgCCGUCGCGCggcaccaCGCGCaCGUgCGUg -3'
miRNA:   3'- -CUUa--GGCAGUGCGa------GUGCG-GCA-GCGu -5'
25568 3' -55.9 NC_005337.1 + 67971 0.66 0.906997
Target:  5'- ---aCCGcgGCGCUCACGCgGUC-CAg -3'
miRNA:   3'- cuuaGGCagUGCGAGUGCGgCAGcGU- -5'
25568 3' -55.9 NC_005337.1 + 127452 0.66 0.900694
Target:  5'- gGAAUCCaUCAUGCgCACGCuCGUgGaCAg -3'
miRNA:   3'- -CUUAGGcAGUGCGaGUGCG-GCAgC-GU- -5'
25568 3' -55.9 NC_005337.1 + 16152 0.66 0.873166
Target:  5'- ----aCGUCgaaguaGCGCUCGCGCCG-CGUu -3'
miRNA:   3'- cuuagGCAG------UGCGAGUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 133648 0.66 0.900694
Target:  5'- gGAcgUCGcCGCGCUgGaCGCCGaCGCGg -3'
miRNA:   3'- -CUuaGGCaGUGCGAgU-GCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 121492 0.66 0.900694
Target:  5'- -cAUCUG-CGgGUUCACGCCGcUGCAc -3'
miRNA:   3'- cuUAGGCaGUgCGAGUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 30705 0.66 0.873166
Target:  5'- ---cCCGUCGCGgaaCUC-CGCCGggaagUCGCAg -3'
miRNA:   3'- cuuaGGCAGUGC---GAGuGCGGC-----AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 82565 0.66 0.887386
Target:  5'- cGAUCaucaGCGCgu-CGCCGUCGCAg -3'
miRNA:   3'- cUUAGgcagUGCGaguGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 97771 0.66 0.900694
Target:  5'- aGGAU-CGUCGCGCcgaGCGCCGcggcCGCGg -3'
miRNA:   3'- -CUUAgGCAGUGCGag-UGCGGCa---GCGU- -5'
25568 3' -55.9 NC_005337.1 + 6248 0.66 0.900694
Target:  5'- cGAGUCagCGUCgcugACGCUgGCGCCGgCGUc -3'
miRNA:   3'- -CUUAG--GCAG----UGCGAgUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 123838 0.67 0.858072
Target:  5'- --cUCCGUCccgGCGUUCGCGgCGU-GCAu -3'
miRNA:   3'- cuuAGGCAG---UGCGAGUGCgGCAgCGU- -5'
25568 3' -55.9 NC_005337.1 + 103810 0.67 0.850212
Target:  5'- ---aCCGUCGCGCUCAUGuCCuUCaaggGCAu -3'
miRNA:   3'- cuuaGGCAGUGCGAGUGC-GGcAG----CGU- -5'
25568 3' -55.9 NC_005337.1 + 75177 0.67 0.850212
Target:  5'- ---cUCGUCGC-CUCGCGCgCGUcCGCGg -3'
miRNA:   3'- cuuaGGCAGUGcGAGUGCG-GCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 3016 0.67 0.850212
Target:  5'- --cUCCGgcaGCGCgugCGCGCCGaugugCGCGa -3'
miRNA:   3'- cuuAGGCag-UGCGa--GUGCGGCa----GCGU- -5'
25568 3' -55.9 NC_005337.1 + 19783 0.67 0.858072
Target:  5'- cGAcgCCG-CugGaCUCgGCGUCGUCGUAg -3'
miRNA:   3'- -CUuaGGCaGugC-GAG-UGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 91420 0.67 0.858072
Target:  5'- --cUUCGUCACGCagGCGuCCGUCa-- -3'
miRNA:   3'- cuuAGGCAGUGCGagUGC-GGCAGcgu -5'
25568 3' -55.9 NC_005337.1 + 46653 0.67 0.865725
Target:  5'- cGAGUCgGggcugCGCGCgaUCGCGCagcaGUCGCc -3'
miRNA:   3'- -CUUAGgCa----GUGCG--AGUGCGg---CAGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.